CF509563

Overview
NameCF509563
Unique NameCF509563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF509563_ssr144 microsatellite CF509563_ssr144:144..155. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1984 contig Csv1_Contig1984:369..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: AB11G_ARATH (ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.166e-31
Identity = 58/104 (55.77%), Postives = 79/104 (75.96%), Query Frame = 3
Query:   63 LITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQ 374
            LI TLTV E ++YSA+++LPD M + +K+   E TI EMGLQD  +T IG W  +G+SGG+KRRVSI +E+L RP+LLFLDEPTSGLDSA++++V   +  L +
Sbjct:  137 LIGTLTVRETIWYSARVRLPDKMLRSEKRALVERTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALSR 240          

HSP 2 Score: 34.2686 bits (77), Expect = 2.166e-31
Identity = 14/19 (73.68%), Postives = 17/19 (89.47%), Query Frame = 2
Query:    2 NGRKRALAYGTSAYVTQDD 58
            NGRK  L++GT+AYVTQDD
Sbjct:  117 NGRKTKLSFGTAAYVTQDD 135          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: AB15G_ARATH (ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.892e-27
Identity = 53/102 (51.96%), Postives = 77/102 (75.49%), Query Frame = 3
Query:   63 LITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 368
            L+ TLTV E + YSA L+LP  M+K +  +  E TI E+GLQD  +  IG W A+G+SGG+++RVSI +E+LTRP++LFLDEPTSGLDSA++++V+  +  +
Sbjct:  113 LLGTLTVRETITYSAHLRLPSDMSKEEVSDIVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTRPQILFLDEPTSGLDSASAFFVIQALRNI 214          

HSP 2 Score: 28.4906 bits (62), Expect = 2.892e-27
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2
Query:    2 NGRKRALAYGTSAYVTQDD 58
            NG+K  L YG  AYVTQ+D
Sbjct:   93 NGKKARLDYGLVAYVTQED 111          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: AB13G_ARATH (ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.832e-26
Identity = 49/96 (51.04%), Postives = 74/96 (77.08%), Query Frame = 3
Query:   63 LITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVM 350
            L+ TLTV E++ YSA L+LP  +T+ +  +  E TI +MGL++  +  IG W  +G+SGG+K+R+SI +E+LT+P LLFLDEPTSGLDSA++++V+
Sbjct:   98 LLGTLTVRESISYSAHLRLPSKLTREEISDIVEATITDMGLEECSDRTIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGLDSASAFFVV 193          

HSP 2 Score: 30.8018 bits (68), Expect = 1.832e-26
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2
Query:    2 NGRKRALAYGTSAYVTQDD 58
            NG+KR L +G +AYVTQ+D
Sbjct:   78 NGKKRRLDFGAAAYVTQED 96          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: AB12G_ARATH (ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.256e-26
Identity = 55/114 (48.25%), Postives = 82/114 (71.93%), Query Frame = 3
Query:   63 LITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTI 404
            L+ TLTV E + YSA L+L   +TK +  +  E TI E+GLQD  +  IG W ++G+SGG+++RVS+ +E+LTRP++LFLDEPTSGLDSA++++V+  +  +  RD   G RT+
Sbjct:  112 LMGTLTVRETITYSAHLRLSSDLTKEEVNDIVEGTIIELGLQDCADRVIGNWHSRGVSGGERKRVSVALEILTRPQILFLDEPTSGLDSASAFFVIQALRNI-ARD---GGRTV 221          

HSP 2 Score: 28.4906 bits (62), Expect = 5.256e-26
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2
Query:    2 NGRKRALAYGTSAYVTQDD 58
            NG+K  L YG  AYVTQ+D
Sbjct:   92 NGKKARLDYGLVAYVTQED 110          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: ABCG2_PIG (ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.525e-19
Identity = 44/102 (43.14%), Postives = 72/102 (70.59%), Query Frame = 3
Query:   72 TLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 377
            TLTV E + +SA L+LP TMT  +K ER  M I+E+GL    ++++G    +G+SGG+++R SI +E++T P +LFLDEPT+GLDS+ +  V+  + ++ ++
Sbjct:  133 TLTVRENLQFSAALRLPTTMTNHEKNERINMVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQ 234          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: AB20G_ARATH (ABC transporter G family member 20 OS=Arabidopsis thaliana GN=ABCG20 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.525e-19
Identity = 46/104 (44.23%), Postives = 73/104 (70.19%), Query Frame = 3
Query:   63 LITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQ 374
            L   LTV E + +SA+ +LP +++K +KK R +  I ++GL++A  T IG  G +G+SGG++RRVSI  +++  P +LFLDEPTSGLDS ++Y V+  + ++ Q
Sbjct:  195 LFPMLTVEETLMFSAEFRLPSSLSKKKKKARVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGTDIIHDPIILFLDEPTSGLDSTSAYMVVKVLQRIAQ 298          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: AB19G_ARATH (ABC transporter G family member 19 OS=Arabidopsis thaliana GN=ABCG19 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.602e-19
Identity = 46/104 (44.23%), Postives = 74/104 (71.15%), Query Frame = 3
Query:   63 LITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQ 374
            L   LTV E + ++++ +LP +++K +K ER E  I ++GL++A NT IG  G +G+SGG++RRVSI I+++  P +LFLDEPTSGLDS  ++ V+  + ++ Q
Sbjct:  169 LFPMLTVKETLMFASEFRLPRSLSKSKKMERVEALIDQLGLRNAANTVIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTNAFMVVQVLKRIAQ 272          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: ABCG2_BOVIN (ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.438e-19
Identity = 43/102 (42.16%), Postives = 71/102 (69.61%), Query Frame = 3
Query:   72 TLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 377
            TLTV E + +SA L+LP TMT  +K ER    I+E+GL    ++++G    +G+SGG+++R SI +E++T P +LFLDEPT+GLDS+ +  V+  + ++ ++
Sbjct:  132 TLTVRENLQFSAALRLPTTMTSYEKNERINKVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQ 233          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: AB22G_ARATH (ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.438e-19
Identity = 47/92 (51.09%), Postives = 66/92 (71.74%), Query Frame = 3
Query:   63 LITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAAS 338
            L   LTV E + Y+A+L+LP T+T+ QKK+RA   I+E+GL+   +T IGG   +G+SGG+++RVSI  E++  P LL LDEPTSGLDS  +
Sbjct:  247 LFPHLTVKETLTYAARLRLPKTLTREQKKQRALDVIQELGLERCQDTMIGGAFVRGVSGGERKRVSIGNEIIINPSLLLLDEPTSGLDSTTA 338          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: AB2G_ARATH (ABC transporter G family member 2 OS=Arabidopsis thaliana GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.796e-19
Identity = 46/104 (44.23%), Postives = 72/104 (69.23%), Query Frame = 3
Query:   63 LITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQ 374
            L   LTV E + +SA+ +LP +++K +KK R +  I ++GL+ A  T IG  G +G+SGG++RRVSI  +++  P +LFLDEPTSGLDS ++Y V+  + ++ Q
Sbjct:  202 LFPMLTVEETLMFSAEFRLPRSLSKKKKKARVQALIDQLGLRSAAKTVIGDEGHRGVSGGERRRVSIGNDIIHDPIILFLDEPTSGLDSTSAYMVIKVLQRIAQ 305          
The following BLAST results are available for this feature:
BLAST of CF509563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
AB11G_ARATH2.166e-3155.77ABC transporter G family member 11 OS=Arabidopsis ... [more]
AB15G_ARATH2.892e-2751.96ABC transporter G family member 15 OS=Arabidopsis ... [more]
AB13G_ARATH1.832e-2651.04ABC transporter G family member 13 OS=Arabidopsis ... [more]
AB12G_ARATH5.256e-2648.25ABC transporter G family member 12 OS=Arabidopsis ... [more]
ABCG2_PIG1.525e-1943.14ATP-binding cassette sub-family G member 2 OS=Sus ... [more]
AB20G_ARATH1.525e-1944.23ABC transporter G family member 20 OS=Arabidopsis ... [more]
AB19G_ARATH2.602e-1944.23ABC transporter G family member 19 OS=Arabidopsis ... [more]
ABCG2_BOVIN4.438e-1942.16ATP-binding cassette sub-family G member 2 OS=Bos ... [more]
AB22G_ARATH4.438e-1951.09ABC transporter G family member 22 OS=Arabidopsis ... [more]
AB2G_ARATH5.796e-1944.23ABC transporter G family member 2 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-071 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509563 ID=CF509563; Name=CF509563; organism=Citrus sinensis; type=EST; length=404bp
TAATGGGCGCAAACGGGCACTGGCTTATGGAACCTCGGCATATGTGACAC
AAGATGACGCCTTTGATCACTACACTGACGGTTAGTGAAGCAGTGTACTA
CTCAGCTCAGCTGCAATTGCCGGACACGATGACCAAATTACAGAAGAAAG
AAAGAGCAGAAATGACAATAAAAGAAATGGGGCTCCAAGATGCCATGAAT
ACAAGAATTGGAGGCTGGGGAGCTAAAGGCCTTAGTGGTGGTCAAAAGAG
GAGAGTTAGCATTTGCATTGAAATGTTGACTCGACCAAAGCTTCTATTTC
TTGACGAGCCAACAAGCGGACTTGATAGTGCTGCTTCATACTATGTAATG
AGCAGGATTGCTAAGCTTGATCAAAGAGATCATGGAGTGGGATCAAGAAC
AATA
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