CF509564

Overview
NameCF509564
Unique NameCF509564
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509564 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 7.635e-69
Identity = 125/152 (82.24%), Postives = 135/152 (88.82%), Query Frame = 3
Query:    3 KFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFC-QSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQ 455
            ++IWEFNFRDFDV  D HAPDSIELLR  GIDFERNR EGV+S RFAELMMSSGL+CNESVSWVTFHSAYDFGYLVKILTRR LP  L EFL +LR FFG+ +YDVKHIMRFC Q LYGGLDRVAR+L+V+RAVGKCHQAGSDSLLTW AFQ
Sbjct:  102 RYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQAFQ 253          
BLAST of CF509564 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 3.789e-68
Identity = 123/151 (81.46%), Postives = 134/151 (88.74%), Query Frame = 3
Query:    6 FIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQ-SLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQ 455
            FIWEFNFRDFDVA DAHAPDSIELLR QGIDFERN  +GV+S RFAELMMSSGLVCNE VSWVTFHSAYDFGYL+KILTRR LP  L EF  V+RV FG  +YDVKH+M+FC+  L+GGLDRVARTL+V+RAVGKCHQAGSDSLLTWHAFQ
Sbjct:  105 FIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQ 255          
BLAST of CF509564 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 8.214e-47
Identity = 90/149 (60.40%), Postives = 116/149 (77.85%), Query Frame = 3
Query:    9 IWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQ 455
            IW+FNFR+FD+ +D +A DSIELLR  GIDF +N E G+DS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT ++LP     F  ++ V+F   +YD+KH+M+FC SL+GGL+++A  LDV R VG CHQAGSDSLLT   F+
Sbjct:   99 IWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCTFR 245          
BLAST of CF509564 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 4.507e-45
Identity = 86/149 (57.72%), Postives = 114/149 (76.51%), Query Frame = 3
Query:    9 IWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQ 455
            IW+FNFR+F++  D +A +SIELLR  GIDF++N E+G+D VRF ELMMSSG+V N+++SWVTFH  YDFGYLVK+LT + LP    +F  +L V+F   +YD+KH+M FC  L+GGL+R+A  + V R VG CHQAGSDSLLT  +F+
Sbjct:   98 IWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLGSFR 244          
BLAST of CF509564 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 4.507e-45
Identity = 86/149 (57.72%), Postives = 115/149 (77.18%), Query Frame = 3
Query:    9 IWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQ 455
            IW+FNFR+FD+ +D  A DSIELL+  GID  +N  +G+DS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT ++LP    +F  ++ V+F   +YD+KH+M+FC SL+GGL+++A  L+V R VG CHQAGSDSLLT   F+
Sbjct:   98 IWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFR 244          
BLAST of CF509564 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 8.796e-41
Identity = 81/148 (54.73%), Postives = 106/148 (71.62%), Query Frame = 3
Query:    9 IWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAF 452
            IW+FNFR+F+V +D  A DSIELLR   ID E+N E GVD+ RFAEL+M SG+V N+ + WVTFH  YDFGYL+K+L+ + LP  + +F   +  FF   +YD+K++M FC +LYGGL+++A  L V R VG  HQAGSDSLLT   F
Sbjct:  108 IWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISDFFDQMEKFF-PVVYDIKYLMGFCTNLYGGLEKIAELLGVKR-VGISHQAGSDSLLTLRTF 253          
BLAST of CF509564 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 5.900e-37
Identity = 75/147 (51.02%), Postives = 109/147 (74.15%), Query Frame = 3
Query:   12 WEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAF 452
            W+FNF+ F++  D ++ DSI+LL   G+ F+++ EEG+D++ FAEL+M+SG+V  ++V W++FHS YDFGY+VK+LT   LP    EF  +L +FF  +IYDVK++M+ C++L GGL  VA  LD+ R +G+ HQAGSDSLLT  AF
Sbjct:   95 WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGMAF 238          
BLAST of CF509564 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 5.900e-37
Identity = 75/147 (51.02%), Postives = 109/147 (74.15%), Query Frame = 3
Query:   12 WEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAF 452
            W+FNF+ F++  D ++ DSI+LL   G+ F+++ EEG+D++ FAEL+M+SG+V  ++V W++FHS YDFGY+VK+LT   LP    EF  +L +FF  +IYDVK++M+ C++L GGL  VA  LD+ R +G+ HQAGSDSLLT  AF
Sbjct:   95 WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGMAF 238          
BLAST of CF509564 vs. ExPASy Swiss-Prot
Match: CNOT7_XENLA (CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 5.900e-37
Identity = 78/147 (53.06%), Postives = 106/147 (72.11%), Query Frame = 3
Query:   12 WEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAF 452
            W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  +LR+FF   IYDVK++M+ C++L GGL  VA  L++ R +G  HQAGSDSLLT  AF
Sbjct:   95 WQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVEQDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAF 238          
BLAST of CF509564 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 5.900e-37
Identity = 78/147 (53.06%), Postives = 107/147 (72.79%), Query Frame = 3
Query:   12 WEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAF 452
            W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  +LR+FF   IYDVK++M+ C++L GGL  VA  L++ R +G  HQAGSDSLLT  AF
Sbjct:   95 WQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAF 238          
The following BLAST results are available for this feature:
BLAST of CF509564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1K_ARATH7.635e-6982.24Probable CCR4-associated factor 1 homolog 11 OS=Ar... [more]
CAF1I_ARATH3.789e-6881.46Probable CCR4-associated factor 1 homolog 9 OS=Ara... [more]
CAF1G_ARATH8.214e-4760.40Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1J_ARATH4.507e-4557.72Probable CCR4-associated factor 1 homolog 10 OS=Ar... [more]
CAF1F_ARATH4.507e-4557.72Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1B_ARATH8.796e-4154.73Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
CNOT8_MOUSE5.900e-3751.02CCR4-NOT transcription complex subunit 8 OS=Mus mu... [more]
CNOT8_HUMAN5.900e-3751.02CCR4-NOT transcription complex subunit 8 OS=Homo s... [more]
CNOT7_XENLA5.900e-3753.06CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
CNOT7_MOUSE5.900e-3753.06CCR4-NOT transcription complex subunit 7 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-072 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509564 ID=CF509564; Name=CF509564; organism=Citrus sinensis; type=EST; length=456bp
ATAAATTCATCTGGGAGTTCAACTTCCGGGACTTCGATGTCGCGACTGAC
GCCCACGCGCCGGATTCGATAGAGCTTCTGAGACTGCAGGGGATTGACTT
TGAGCGCAACAGGGAGGAAGGCGTTGACTCGGTTCGGTTCGCCGAGTTGA
TGATGTCGTCGGGACTCGTCTGTAACGAGTCGGTGAGTTGGGTCACGTTC
CACAGCGCGTACGATTTCGGGTACCTGGTTAAGATCCTCACGCGCCGGAG
CTTGCCCAGTGGCCTAGACGAGTTTTTGACGGTCCTCAGGGTGTTTTTCG
GTAACAACATTTATGACGTCAAACACATTATGCGGTTCTGTCAGAGCTTG
TACGGTGGGCTGGACCGAGTGGCTCGGACGTTGGATGTGAGCCGGGCGGT
CGGGAAGTGCCACCAGGCCGGTTCGGATAGCCTTCTGACCTGGCATGCCT
TTCAAA
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