CF509566

Overview
NameCF509566
Unique NameCF509566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF509566_ssr22 microsatellite CF509566_ssr22:22..54. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2145 contig Csv1_Contig2145:125..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF509566 vs. ExPASy Swiss-Prot
Match: NO93_SOYBN (Early nodulin-93 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.510e-18
Identity = 49/92 (53.26%), Postives = 60/92 (65.22%), Query Frame = 3 
Query:  108 NSPLIASPAEDLKAKAA--NDCVQEGVRAGLKAAAVMCVVTAVPTLVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNA 377
            NSPL       L  K A    C  EGV AG KAA V  V +A+PTL +VR +PWA+ANLN+T QALIIS  + A+YFI  DKT+L  AR+N+
Sbjct:    5 NSPLERPSLASLDQKLAFAKRCSHEGVLAGAKAAVVASVASAIPTLASVRMLPWARANLNHTAQALIISTATAAAYFIVADKTVLATARKNS 96
The following BLAST results are available for this feature:
BLAST of CF509566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NO93_SOYBN1.510e-1853.26Early nodulin-93 OS=Glycine max PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-074 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509566 ID=CF509566; Name=CF509566; organism=Citrus sinensis; type=EST; length=553bp
TTTGAGTTTCTTATTCTAATTAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGGAATGGGATTTCCGTCGGAAGTTAGAGATATTTTTGCATCCAGAAG
GTCAAATAACTCGCCACTGATTGCCTCTCCTGCTGAAGATCTAAAGGCTA
AGGCCGCCAACGACTGCGTTCAAGAAGGCGTTCGAGCTGGATTAAAGGCC
GCTGCCGTAATGTGTGTTGTCACCGCTGTGCCTACGTTGGTTGCAGTTCG
AAAAATTCCTTGGGCAAAGGCAAACCTGAATTATACTGGTCAGGCACTCA
TCATATCCGCAGTGTCAATTGCTTCTTACTTCATCACTGTTGACAAGACT
ATTTTGGAGTGTGCAAGGAGGAATGCCCAGTATGGCAAACCAACTTGAGA
TTCTGTACCTGAAGCAATTCACCATGAAGATGCCATGATATGCGTAGTGA
GCATAGCACGCAGGTTCATATGAGAATATTTAAATGTATTTGAGACAATT
TTTTTCCCCACTTGAGCAACCGATGGAATTCTCGTGCAATAAGTTTACCA
TTT
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