CF509567

Overview
NameCF509567
Unique NameCF509567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509567 vs. ExPASy Swiss-Prot
Match: CP062_HUMAN (UPF0505 protein C16orf62 OS=Homo sapiens GN=C16orf62 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 9.395e-20
Identity = 63/195 (32.31%), Postives = 106/195 (54.36%), Query Frame = 1
Query:   16 STSSNHHKVDVVDHESH--DFFDPLRSPAANA--VALNKDVEDGXXXXXXXXXXXXXXXXKEWTTFKRFLMQKFPVSKMVSVSL-MPDVIIKTGKANV--KDSTTKHLKELDDPANFAEEDVKVITGQEYVSRLHELKDEIKRAWTAEDRVTSLKLSIKVARLLMDTSVLQFYPTLFVLVVEIMDMLGNLVWERI 579
            S++S+     VVD  S   D  DPL   AA A   AL   ++                  + WT  +  ++ ++  ++ +S++L M     K G A +   +     L+ELDD    +++++  +T Q+YV+R+ EL   +K AW ++ +V +LK+ I+ ++LL DTSV+QFYP+ FVL+ +I+D  G LV+ERI
Sbjct:   55 SSTSSSSSSSVVDPLSSVLDGTDPLSMFAATADPAALAAAMDSSRRKRDRDDNSVVGSDFEPWTNKRGEILARYTTTEKLSINLFMGSEKGKAGTATLAMSEKVRTRLEELDDFEEGSQKELLNLTQQDYVNRIEELNQSLKDAWASDQKVKALKIVIQCSKLLSDTSVIQFYPSKFVLITDILDTFGKLVYERI 249          
BLAST of CF509567 vs. ExPASy Swiss-Prot
Match: CP062_PONAB (UPF0505 protein C16orf62 homolog OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.022e-18
Identity = 61/195 (31.28%), Postives = 103/195 (52.82%), Query Frame = 1
Query:   16 STSSNHHKVDVVDHESH--DFFDPLRSPAANA--VALNKDVEDGXXXXXXXXXXXXXXXXKEWTTFKRFLMQKFPVSKMVSVSL-MPDVIIKTGKANV--KDSTTKHLKELDDPANFAEEDVKVITGQEYVSRLHELKDEIKRAWTAEDRVTSLKLSIKVARLLMDTSVLQFYPTLFVLVVEIMDMLGNLVWERI 579
            S++S+     VVD  S   D  DPL   AA A   AL    +                  + W   +  ++ ++  ++ +S++L M     K G A +   +     L+ELDD    +++++  +T Q+YV+R+ EL   +K AW ++ +V +LK+ I+ ++L  DTSV+QFYP+ FVL+ +I+D  G LV+ERI
Sbjct:   55 SSTSSSSSSSVVDPLSSVLDGTDPLSMFAATADPAALAAATDSSRKKRDRDDNSIVGSDFEPWANKRGEILARYTTTEKLSINLFMGSEKGKAGTATLAMSEKVRTRLEELDDFEEGSQKELLNLTQQDYVNRIEELNQSLKDAWASDQKVKALKIVIQCSKLPSDTSVIQFYPSKFVLITDILDTFGKLVYERI 249          
BLAST of CF509567 vs. ExPASy Swiss-Prot
Match: CP062_DANRE (UPF0505 protein C16orf62 homolog OS=Danio rerio GN=zgc:163107 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.022e-18
Identity = 46/135 (34.07%), Postives = 85/135 (62.96%), Query Frame = 1
Query:  190 WTTFKRFLMQKFPVSKMVSVSLMPDVIIKTGKAN-----VKDSTTKHLKELDDPANFAEEDVKVITGQEYVSRLHELKDEIKRAWTAEDRVTSLKLSIKVARLLMDTSVLQFYPTLFVLVVEIMDMLGNLVWERI 579
            W++ +  ++ +F  ++ +S++L       T KA+     V +     L+ELDD    ++ ++  ++ Q+YV+R+ EL   +K AW ++ +V +LK+ I+ ++LL DTSV+QFYP+ FVL+ +I+D  G LV++RI
Sbjct:  118 WSSKRGEILSRFTTTEKLSINLFMGS--DTSKASSPSSAVSEKVRTRLEELDDLEEGSQRELLNLSQQDYVNRIEELNQSLKEAWGSDQKVKALKIVIQCSKLLSDTSVIQFYPSKFVLITDILDTFGGLVYDRI 250          
BLAST of CF509567 vs. ExPASy Swiss-Prot
Match: CP062_RAT (UPF0505 protein C16orf62 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.794e-18
Identity = 45/135 (33.33%), Postives = 84/135 (62.22%), Query Frame = 1
Query:  190 WTTFKRFLMQKFPVSKMVSVSLMPDVIIKTGKAN-----VKDSTTKHLKELDDPANFAEEDVKVITGQEYVSRLHELKDEIKRAWTAEDRVTSLKLSIKVARLLMDTSVLQFYPTLFVLVVEIMDMLGNLVWERI 579
            W   +  ++ ++  ++ +S++L      + G+A      + +     L+ELDD    +++++  +T Q+YV+R+ EL   +K AW ++ +V +LK+ I+ ++LL DTSV+QFYP+ FVL+ +I+D  G LV+ERI
Sbjct:  117 WANKRGEILARYTTTEKLSINLFMGS--EKGRAGAAASAMSEKVRTRLEELDDFEEGSQKELLNLTQQDYVNRIEELNQSLKDAWASDQKVKALKIVIQCSKLLSDTSVIQFYPSKFVLITDILDTFGKLVYERI 249          
BLAST of CF509567 vs. ExPASy Swiss-Prot
Match: CP062_MOUSE (UPF0505 protein C16orf62 homolog OS=Mus musculus PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 8.794e-18
Identity = 46/133 (34.59%), Postives = 82/133 (61.65%), Query Frame = 1
Query:  190 WTTFKRFLMQKFPVSKMVSVSLMPDVIIKTGKANVKDSTTK---HLKELDDPANFAEEDVKVITGQEYVSRLHELKDEIKRAWTAEDRVTSLKLSIKVARLLMDTSVLQFYPTLFVLVVEIMDMLGNLVWERI 579
            W   +  ++ ++  ++ +S++L        G A     + K    L+ELDD    +++++  +T Q+YV+R+ EL   +K AW ++ +V +LK+ I+ ++LL DTSV+QFYP+ FVL+ +I+D  G LV+ERI
Sbjct:  117 WANKRVEILARYTTTEKLSINLFMGSEKGRGGAAASAMSEKVRTRLEELDDFEEGSQKELLNLTQQDYVNRIEELNQSLKDAWASDQKVKALKIVIQCSKLLSDTSVIQFYPSKFVLITDILDTFGKLVYERI 249          
BLAST of CF509567 vs. ExPASy Swiss-Prot
Match: U505_DROME (UPF0505 protein CG8202 OS=Drosophila melanogaster GN=CG8202 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.148e-17
Identity = 46/143 (32.17%), Postives = 89/143 (62.24%), Query Frame = 1
Query:  187 EWTTFKRFLMQKFPVSKMVSVS---LMPDVIIKTGKANVK------DSTTKHLKELDDPANFAEEDVKVITGQEYVSRLHELKDEIKRAWTAEDRVTSLKLSIKVARLLMDTSVLQFYPTLFVLVVEIMDMLGNLVWERIKQK 588
            +W++ +  ++ +F  ++ +S+S   L+    +  G  ++K      D T   L++LD   + +   +  +T QEY+ R  +LK E+ ++W  + RV +LK++I+ A++L DT+VLQFYP+ +VL+ +I+D+ G LV+ER++ K
Sbjct:   94 QWSSRRLGILNRFTTNEKLSLSTSFLVSSGSLDGGNESIKAQTVVADKTKFRLEQLDHFDDGSMRHMMDLTQQEYIQRFEQLKQELIQSWHNDQRVKALKIAIQCAKMLADTTVLQFYPSQYVLITDILDVFGKLVYERLRAK 236          
BLAST of CF509567 vs. ExPASy Swiss-Prot
Match: U505_DICDI (UPF0505 protein OS=Dictyostelium discoideum GN=DDB_G0273473 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.231e-16
Identity = 52/139 (37.41%), Postives = 83/139 (59.71%), Query Frame = 1
Query:  190 WTTFKRFLMQKFPV--SKMVSVSLMPDVIIKTGKANVK-DSTTKHLKELDDPANFAEEDVKV--ITGQEYVSRLHELKDEIKRAWTAEDRVTSLKLSIKVARLLMDTSVLQFYPTLFVLVVEIMDMLGNLVWERIKQKL 591
            W T K  ++Q++    S  + VS M      +GK  +  +   K L+EL+      +ED K    +  + +  L  L  E+ +AW AE+RV SLK++I+ A+LL DTS+++FYP+ FV+  EI+D  GNLV++RIK++L
Sbjct:  148 WDTLKPSILQQYTSDDSNPIQVSFMSTGT--SGKIKIPINRLNKILEELEQD----KEDSKSTQFSQPDIIMDLETLHSELLKAWAAEERVRSLKIAIQTAKLLSDTSLIKFYPSKFVIATEILDTFGNLVYDRIKKRL 280          
The following BLAST results are available for this feature:
BLAST of CF509567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CP062_HUMAN9.395e-2032.31UPF0505 protein C16orf62 OS=Homo sapiens GN=C16orf... [more]
CP062_PONAB3.022e-1831.28UPF0505 protein C16orf62 homolog OS=Pongo abelii P... [more]
CP062_DANRE3.022e-1834.07UPF0505 protein C16orf62 homolog OS=Danio rerio GN... [more]
CP062_RAT8.794e-1833.33UPF0505 protein C16orf62 homolog OS=Rattus norvegi... [more]
CP062_MOUSE8.794e-1834.59UPF0505 protein C16orf62 homolog OS=Mus musculus P... [more]
U505_DROME1.148e-1732.17UPF0505 protein CG8202 OS=Drosophila melanogaster ... [more]
U505_DICDI8.231e-1637.41UPF0505 protein OS=Dictyostelium discoideum GN=DDB... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-075 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509567 ID=CF509567; Name=CF509567; organism=Citrus sinensis; type=EST; length=593bp
CCTCTCTTCGCTCCATCTACATCGTCCAACCATCACAAGGTTGATGTCGT
GGATCATGAAAGTCATGATTTCTTTGATCCACTGAGATCTCCTGCAGCTA
ATGCAGTGGCTTTAAACAAGGATGTGGAAGATGGTGAGAGTAGTTCTACG
GTTTCAAGTGAAGCTGCTGCTGAAGTTTCAGTTAAAGAATGGACCACTTT
TAAGAGATTCTTAATGCAGAAATTTCCTGTCTCCAAAATGGTTTCAGTTT
CTTTAATGCCTGATGTAATAATTAAAACTGGCAAGGCAAATGTGAAAGAC
TCAACAACTAAGCATCTAAAGGAATTGGATGATCCTGCAAATTTTGCTGA
AGAGGATGTCAAGGTGATAACGGGGCAAGAATATGTCTCACGACTACATG
AGCTGAAGGATGAAATTAAGCGTGCTTGGACTGCTGAAGATCGAGTAACA
TCTCTTAAATTATCCATAAAGGTTGCTAGACTTCTGATGGATACATCAGT
TTTACAATTTTATCCCACTCTTTTTGTTCTTGTCGTGGAGATAATGGACA
TGCTCGGGAATTTGGTATGGGAACGCATCAAGCAGAAGCTGAA
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