CF509571

Overview
NameCF509571
Unique NameCF509571
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509571 vs. ExPASy Swiss-Prot
Match: SERA_BACSU (D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis GN=serA PE=3 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 3.322e-16
Identity = 55/179 (30.73%), Postives = 88/179 (49.16%), Query Frame = 2
Query:   26 GNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDV 556
            GN  S AE T  ++  L+R   +  ++++ ++       G  L GKT+ I+G G IG E+A+R R FG+ +         H      +   A K G+     +E             AD++     L K+T G++NK  ++  KKG  L+N ARGG++D  A+   LE+GH+ G  +DV
Sbjct:   94 GNTISTAEHTFAMISSLMRHIPQANISVKSREWNRTAYVGSELYGKTLGIVGLGRIGSEIAQRARAFGMTV---------HVFDPFLTEERAKKIGVNSRTFEE---------VLESADIITVHTPLTKETKGLLNKETIAKTKKGVRLINCARGGIIDEAALLEALENGHVAGAALDV 254          
BLAST of CF509571 vs. ExPASy Swiss-Prot
Match: FDH_NEUCR (Formate dehydrogenase OS=Neurospora crassa GN=fdh PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.069e-14
Identity = 62/187 (33.16%), Postives = 90/187 (48.13%), Query Frame = 2
Query:   17 DVTG-NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGET----LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE--DIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDV 556
            +VTG N  S AE  +  +L L+R        I++ +  V         L GK V  +G G IG  + +RL+PF  K +     +  +  +S +  A             E GC    D+ +  +  DVV     L+++T G+ NK  +S MKKGS LVN ARG ++  E +A  L+SGHL G G DV
Sbjct:  115 EVTGSNVVSVAEHVLMTILVLVRNFVPAHEQIQEGRWDVAEAAKNEFDLEGKVVGTVGVGRIGERVLRRLKPFDCKELL----YYDYQPLSAEKEA-------------EIGCRRVADLEEMLAQCDVVTINCPLHEKTQGLFNKELISKMKKGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDV 284          
BLAST of CF509571 vs. ExPASy Swiss-Prot
Match: GYAR_PYRAB (Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.060e-14
Identity = 57/188 (30.32%), Postives = 93/188 (49.47%), Query Frame = 2
Query:   11 PGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDV 556
            PG +T   A  A   +      L K ++   + E KK GV        G  + GKT+ I+GFG IG  +AKR R F ++I+   R+     +       L  +   +D+L+ E             +D VV  + LNK+T  ++N+  L  MK+ ++L+N+ARG ++D +A+   L+ G + G G+DV
Sbjct:   98 PGVLTDATADLAFALLLATARHLVKGDKFTRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGFGRIGQAIAKRARGFDMRILYYSRTRKPEVE-----KELNAEFKPLDELLRE-------------SDFVVLAVPLNKETYHMINEERLKMMKRTAILINVARGKVIDTKALIKALKEGWIAGAGLDV 267          
BLAST of CF509571 vs. ExPASy Swiss-Prot
Match: SERA_MYCLE (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae GN=serA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.046e-14
Identity = 56/180 (31.11%), Postives = 88/180 (48.89%), Query Frame = 2
Query:   23 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDV 556
            T N  S AE  + L+L   R+  E   ++     K    +G  + GKTV ++G G IG  +A R+  FG  +IA     A       +++ L ++    DDL+             + AD +   L    +TAG+++K  L+  K G ++VN ARGGL+D  A+A  + SGH+   G+DV
Sbjct:   96 TSNIHSAAEHALALLLAASRQIAEADASLRAHIWKRSSFSGTEIFGKTVGVVGLGRIGQLVAARIAAFGAHVIAYDPYVAP-----ARAAQLGIELMSFDDLL-------------ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEVALADAVRSGHVRAAGLDV 257          
BLAST of CF509571 vs. ExPASy Swiss-Prot
Match: GYAR_PYRKO (Glyoxylate reductase OS=Pyrococcus kodakaraensis GN=gyaR PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.181e-13
Identity = 48/140 (34.29%), Postives = 77/140 (55.00%), Query Frame = 2
Query:  137 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDV 556
            G  + GKT+ I+GFG IG  +A+R R FG++I+   RS    ++       L  +   ++DL+ E             +D VV  + L K+T  ++N+  L  MKK ++LVNIARG ++D +A+   L+ G + G G+DV
Sbjct:  145 GYDVYGKTIGIVGFGRIGQAVARRARGFGMRILYYSRSRKPEAE-----KELGAEFRSLEDLLRE-------------SDFVVLAVPLTKETQYMINEERLRLMKKTAILVNIARGKVVDTKALMKALKEGWIAGAGLDV 266          
BLAST of CF509571 vs. ExPASy Swiss-Prot
Match: FDH_ARATH (Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.632e-13
Identity = 46/139 (33.09%), Postives = 73/139 (52.52%), Query Frame = 2
Query:  146 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH--EDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDV 556
            L GKT+  +G G IG  L +RL+PFG  ++        H ++            +  +L  E G    ED+ +     DV+V  + L ++T G+ NK  +  +KKG L+VN ARG +++ +A+   +ESGH+GG   DV
Sbjct:  195 LEGKTIGTVGAGRIGKLLLQRLKPFGCNLLY-------HDRLQ-----------MAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDV 315          
BLAST of CF509571 vs. ExPASy Swiss-Prot
Match: GYAR_THEON (Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.437e-13
Identity = 58/189 (30.69%), Postives = 93/189 (49.21%), Query Frame = 2
Query:   17 DVTGNAASCAELTIYLMLGLLRKQNEMRMAI---EQKKLGVP------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDV 556
            DV  NA   A++   L+L   R+  E    +   E KK GV        G  + G+T+ I+GFG IG  +A+R + FG++I+   R+     +    +  +      +D+L+ E             +D VV  + L K+T  ++N+  L  MK  ++LVNIARG ++D EA+   L  G + G G+DV
Sbjct:   98 DVLTNAT--ADMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARRAKGFGMRILYNSRTRKPEVEKELGAEFMP-----LDELLKE-------------SDFVVLVVPLTKETYHMINEERLKLMKPTAILVNIARGKVVDTEALVKALREGWIAGAGLDV 266          
BLAST of CF509571 vs. ExPASy Swiss-Prot
Match: SERA_MYCTU (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis GN=serA PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.658e-13
Identity = 52/180 (28.89%), Postives = 89/180 (49.44%), Query Frame = 2
Query:   23 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDV 556
            T N  S AE  + L+L   R+      ++ +   K    +G  + GKTV ++G G IG  +A+R+  FG  ++A     +       +++ L ++   +DDL+             + AD +   L    +TAG+++K  L+  K G ++VN ARGGL+D  A+A  +  GH+   G+DV
Sbjct:   96 TSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-----ARAAQLGIELLSLDDLL-------------ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDV 257          
BLAST of CF509571 vs. ExPASy Swiss-Prot
Match: SERA_MYCBO (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis GN=serA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.658e-13
Identity = 52/180 (28.89%), Postives = 89/180 (49.44%), Query Frame = 2
Query:   23 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDV 556
            T N  S AE  + L+L   R+      ++ +   K    +G  + GKTV ++G G IG  +A+R+  FG  ++A     +       +++ L ++   +DDL+             + AD +   L    +TAG+++K  L+  K G ++VN ARGGL+D  A+A  +  GH+   G+DV
Sbjct:   96 TSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-----ARAAQLGIELLSLDDLL-------------ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDV 257          
BLAST of CF509571 vs. ExPASy Swiss-Prot
Match: GYAR_THEPD (Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.000e-12
Identity = 57/190 (30.00%), Postives = 87/190 (45.79%), Query Frame = 2
Query:   11 PGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA--TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDV 556
            PG +T    + AE T+ L+L + R+  E    I   +   P      TG  L GKT+ ++G G IGV  AKRL  F VKI+    +R W   + +                         D+      +D+V   + L K+T  ++N+  L  MKK + L+N ARG ++D EA+   L+ G + G  +DV
Sbjct:   99 PGVLTD---AVAEFTVGLILAVTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKRLSSFDVKILYYDIERRWDVETVIPNMEFT-------------------DLDTLLEKSDIVSIHVPLTKETYHLINEERLRKMKKTAYLINTARGPVVDTEALVKALKEGWIAGAALDV 266          
The following BLAST results are available for this feature:
BLAST of CF509571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
SERA_BACSU3.322e-1630.73D-3-phosphoglycerate dehydrogenase OS=Bacillus sub... [more]
FDH_NEUCR1.069e-1433.16Formate dehydrogenase OS=Neurospora crassa GN=fdh ... [more]
GYAR_PYRAB4.060e-1430.32Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR ... [more]
SERA_MYCLE9.046e-1431.11D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
GYAR_PYRKO1.181e-1334.29Glyoxylate reductase OS=Pyrococcus kodakaraensis G... [more]
FDH_ARATH2.632e-1333.09Formate dehydrogenase, mitochondrial OS=Arabidopsi... [more]
GYAR_THEON3.437e-1330.69Glyoxylate reductase OS=Thermococcus onnurineus (s... [more]
SERA_MYCTU7.658e-1328.89D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCBO7.658e-1328.89D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
GYAR_THEPD1.000e-1230.00Glyoxylate reductase OS=Thermofilum pendens (strai... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-079 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509571 ID=CF509571; Name=CF509571; organism=Citrus sinensis; type=EST; length=564bp
TGCTAGAATCCCAGGTGACGTGACTGGAAATGCTGCATCGTGTGCTGAAT
TGACCATATATCTAATGCTGGGCCTTCTCAGAAAGCAGAATGAGATGAGA
ATGGCCATAGAGCAAAAAAAACTTGGAGTGCCAACTGGTGAGACACTACT
TGGGAAAACTGTATTTATCTTGGGCTTTGGAAATATTGGGGTTGAATTGG
CAAAGCGCTTGCGACCATTTGGTGTGAAAATTATTGCCACAAAAAGGAGT
TGGGCTTCACATTCTCAAGTTTCTTGCCAATCTAGTGCACTTGCAGTAAA
AAACGGGATCATTGATGATTTGGTTGATGAGAAGGGTTGTCATGAAGATA
TTTTTAAGTTTGCTAGCATGGCCGACGTGGTTGTTTGTTGCCTGAGTTTA
AATAAGCAGACGGCTGGCATTGTAAACAAGTCATTTCTATCTTCAATGAA
AAAGGGTTCTCTTCTGGTGAATATTGCTCGAGGAGGGCTTTTAGACTATG
AGGCCATTGCTCATTACCTCGAATCTGGCCACTTGGGAGGCTTGGGCATT
GATGTTGCTTGGAC
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