CF509573

Overview
NameCF509573
Unique NameCF509573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF509573_ssr35 microsatellite CF509573_ssr35:35..49. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3407 contig Csv1_Contig3407:1..597. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF509573 vs. ExPASy Swiss-Prot
Match: UBAC2_CHICK (Ubiquitin-associated domain-containing protein 2 OS=Gallus gallus GN=UBAC2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.206e-13
Identity = 48/164 (29.27%), Postives = 86/164 (52.44%), Query Frame = 3 
Query:  153 GPSGFNNAPVTRAFVIACALFTVFFGIQGRFNKLGLSY--QDIFQNFRLWRLIVSGFSFSSAPELMFGLYLLYYFRVFERQIGSNKYSVFILFSITVSFLFEVLTLA----LLKDPAMKLTSGPYGLIFASFVPFYFDIPVSTRFRVFG-VHFSDKSFIYLAGL 623
            G +G   AP++++ ++  +  ++   +  +  +   +Y  Q I ++F++WRL+          +      L+Y FR+FER+ GS K+S F+L + T+S LF++L +     +       L SG  G +FA FVPFY  IP     +V G    ++K+ +Y+ GL
Sbjct:    6 GSNGLYKAPLSKSLLLVPSAISILLTLLFQHYQKFFAYNLQAIKEDFQIWRLVCGRVICLDLKDTFCSSLLIYNFRIFERRYGSRKFSSFLLGAWTLSALFDLLLVEAAQYVFGITINSLPSGFLGPVFALFVPFYCSIPRVQVTQVLGYFSITNKTLVYILGL 169
[Close]
BLAST of CF509573 vs. ExPASy Swiss-Prot
Match: UBAC2_HUMAN (Ubiquitin-associated domain-containing protein 2 OS=Homo sapiens GN=UBAC2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.932e-12
Identity = 48/165 (29.09%), Postives = 83/165 (50.30%), Query Frame = 3 
Query:  153 GPSGFNNAPVTRAFVIACALFTVFFGIQ-GRFNKLGL-SYQDIFQNFRLWRLIVSGFSFSSAPELMFGLYLLYYFRVFERQIGSNKYSVFILFSITVSFLFEVLTLALLK-----DPAMKLTSGPYGLIFASFVPFYFDIPVSTRFRVFG-VHFSDKSFIYLAGL 623
            G SG   AP++++ ++  +  ++   +      KL +     +  +F++WRLI          +      L+Y FR+FER+ GS K++ F+L S  +S LF+ L +  ++       A  L SG    +FA FVPFY  IP     ++ G +  ++K+ IY+ GL
Sbjct:    6 GSSGLYKAPLSKSLLLVPSALSLLLALLLPHCQKLFVYDLHAVKNDFQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASFLLGSWVLSALFDFLLIEAMQYFFGITAASNLPSGFLAPVFALFVPFYCSIPRVQVAQILGPLSITNKTLIYILGL 170
[Close]
BLAST of CF509573 vs. ExPASy Swiss-Prot
Match: UBAC2_MACFA (Ubiquitin-associated domain-containing protein 2 OS=Macaca fascicularis GN=UBAC2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.036e-11
Identity = 48/165 (29.09%), Postives = 83/165 (50.30%), Query Frame = 3 
Query:  153 GPSGFNNAPVTRAFVIACALFTVFFGIQ-GRFNKLGL-SYQDIFQNFRLWRLIVSGFSFSSAPELMFGLYLLYYFRVFERQIGSNKYSVFILFSITVSFLFEVLTLALLK-----DPAMKLTSGPYGLIFASFVPFYFDIPVSTRFRVFG-VHFSDKSFIYLAGL 623
            G SG   AP++++ ++  +  ++   +      KL +     +  +F++WRLI          +      L+Y FR+FER+ GS K++ F+L S  +S LF+ L +  ++       A  L SG    +FA FVPFY  IP     ++ G +  ++K+ IY+ GL
Sbjct:    6 GSSGLYKAPLSKSLLLVPSALSLLLALLLPHCQKLFVYDLHAVKNDFQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASFLLGSWVLSALFDFLLVEAMQYFFGITAASNLPSGFLAPVFALFVPFYCSIPRVQVAQILGPLSITNKTLIYILGL 170
The following BLAST results are available for this feature:
BLAST of CF509573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
UBAC2_CHICK4.206e-1329.27Ubiquitin-associated domain-containing protein 2 O... [more]
UBAC2_HUMAN7.932e-1229.09Ubiquitin-associated domain-containing protein 2 O... [more]
UBAC2_MACFA1.036e-1129.09Ubiquitin-associated domain-containing protein 2 O... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-081 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509573 ID=CF509573; Name=CF509573; organism=Citrus sinensis; type=EST; length=624bp
GAAAGAGAGAGGAAGAGGAGTCTCAGTCGCGAACCAAAACAAAACAAAAA
CTTGAACGAAACGAAAGCAAATAAAAAAATCAATATCAAAGTCAAAATCC
AAAGCAGTTTGGTCGTTGGTTTCTCCTTCTCTTTAAAGAGAAGATGAACG
GCGGCCCCTCTGGTTTTAATAATGCTCCAGTCACGAGAGCGTTCGTCATC
GCTTGTGCCCTCTTCACCGTCTTCTTCGGGATCCAAGGCCGCTTTAATAA
GCTCGGGTTGTCATATCAGGATATTTTCCAGAACTTTCGATTATGGAGGT
TGATTGTGTCAGGTTTTTCCTTTTCATCTGCGCCAGAACTGATGTTTGGA
CTCTACCTGCTATATTACTTTAGGGTGTTTGAGAGGCAGATAGGTTCCAA
CAAGTACTCAGTATTCATATTGTTCTCTATAACAGTTTCTTTTCTCTTTG
AGGTCCTTACATTAGCACTGCTCAAAGATCCTGCAATGAAACTCACGTCT
GGACCATATGGTCTGATATTTGCTTCCTTCGTACCATTTTACTTTGACAT
TCCAGTTTCAACAAGGTTTCGTGTATTTGGAGTCCACTTCTCTGATAAGT
CCTTCATATATCTTGCTGGGCTTC
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