CF509632

Overview
NameCF509632
Unique NameCF509632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length415
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3986 contig Csv1_Contig3986:59..473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF509632 vs. ExPASy Swiss-Prot
Match: RL11_MEDSA (60S ribosomal protein L11 OS=Medicago sativa GN=RPL11 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 1.029e-68
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 3 
Query:   24 MASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFF 413
            MAS+KKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFF
Sbjct:    1 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFF 130
[Close]
BLAST of CF509632 vs. ExPASy Swiss-Prot
Match: RL112_ARATH (60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 3.311e-67
Identity = 125/130 (96.15%), Postives = 130/130 (100.00%), Query Frame = 3 
Query:   24 MASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFF 413
            MAS+KKLSNPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+
Sbjct:    1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130
[Close]
BLAST of CF509632 vs. ExPASy Swiss-Prot
Match: RL111_ARATH (60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=1 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 3.311e-67
Identity = 125/130 (96.15%), Postives = 130/130 (100.00%), Query Frame = 3 
Query:   24 MASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFF 413
            MAS+KKLSNPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+
Sbjct:    1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130
[Close]
BLAST of CF509632 vs. ExPASy Swiss-Prot
Match: RL11_ORYSJ (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica GN=RPL11 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 6.245e-66
Identity = 123/130 (94.62%), Postives = 129/130 (99.23%), Query Frame = 3 
Query:   24 MASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFF 413
            MAS+KK SNPMREIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+
Sbjct:    1 MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130
[Close]
BLAST of CF509632 vs. ExPASy Swiss-Prot
Match: RL11_ORYSI (60S ribosomal protein L11 OS=Oryza sativa subsp. indica GN=RPL11 PE=2 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 6.245e-66
Identity = 123/130 (94.62%), Postives = 129/130 (99.23%), Query Frame = 3 
Query:   24 MASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFF 413
            MAS+KK SNPMREIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+
Sbjct:    1 MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130
[Close]
BLAST of CF509632 vs. ExPASy Swiss-Prot
Match: RL11_SCHPO (60S ribosomal protein L11 OS=Schizosaccharomyces pombe GN=rpl11a PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 4.960e-55
Identity = 103/126 (81.75%), Postives = 115/126 (91.27%), Query Frame = 3 
Query:   36 KKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFF 413
            +K  NPM+E+++ KLVLNIS+GESGDRLTRAAKVLEQLSGQTPVFSKARYT+R FGIRRNEKIAC+VTVRG KA ++LE GLKVKEYEL +RNFS TG FGFGIQEHIDLGIKYDPS GIYGMDF+
Sbjct:    3 EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFY 128
[Close]
BLAST of CF509632 vs. ExPASy Swiss-Prot
Match: RL11_NEUCR (60S ribosomal protein L11 OS=Neurospora crassa GN=rpl-11 PE=3 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 1.105e-54
Identity = 102/130 (78.46%), Postives = 118/130 (90.77%), Query Frame = 3 
Query:   24 MASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFF 413
            M++++K  NPMRE+++QKLVLNI VGESGDRLTRAAKVLEQLSGQTPV+SKARYTVR+FGIRRNEKI+ +VTVRG KA ++LE GLKVKEYEL +RNFS+TG FGFGI EHIDLGIKYDP  GIYGMDF+
Sbjct:    1 MSTEQKAQNPMRELRIQKLVLNICVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRTFGIRRNEKISVHVTVRGPKAEEILERGLKVKEYELRKRNFSETGNFGFGISEHIDLGIKYDPGIGIYGMDFY 130
[Close]
BLAST of CF509632 vs. ExPASy Swiss-Prot
Match: RL11_ASHGO (60S ribosomal protein L11 OS=Ashbya gossypii GN=RPL11 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 3.554e-53
Identity = 100/125 (80.00%), Postives = 114/125 (91.20%), Query Frame = 3 
Query:   39 KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFF 413
            K  NPMRE+K++KLVLNISVGESGDRLTRA+KVLEQLSGQTPV SKARYTVR+FGIRRNEKIA +VT+RG K+ ++LE GLKVKEY+L  +NFS+TG FGFGIQEHIDLGIKYDPS GIYGMDF+
Sbjct:    4 KAQNPMRELKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVHSKARYTVRTFGIRRNEKIAVHVTIRGPKSEEILERGLKVKEYQLRTKNFSETGNFGFGIQEHIDLGIKYDPSIGIYGMDFY 128
[Close]
BLAST of CF509632 vs. ExPASy Swiss-Prot
Match: RL11_CAEEL (60S ribosomal protein L11 OS=Caenorhabditis elegans GN=rpl-11.1 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 4.642e-53
Identity = 101/127 (79.53%), Postives = 112/127 (88.19%), Query Frame = 3 
Query:   33 DKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFF 413
            +KK  N MRE+K+QKL LNI VGESGDRLTRAAKVLEQL+GQTPVFSKARYTVR+FGIRRNEKIA + TVRG KA ++LE GLKVKEYEL + NFSDTG FGFG+QEHIDLGIKYDP  GIYGMDF+
Sbjct:   12 EKKGRNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFY 138
[Close]
BLAST of CF509632 vs. ExPASy Swiss-Prot
Match: RL11_RAT (60S ribosomal protein L11 OS=Rattus norvegicus GN=Rpl11 PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 1.034e-52
Identity = 102/131 (77.86%), Postives = 116/131 (88.55%), Query Frame = 3 
Query:   24 MASDK-KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFF 413
            MA D+ +  NPMRE++++KL LNI VGESGDRLTRAAKVLEQL+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+
Sbjct:    1 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 131
The following BLAST results are available for this feature:
BLAST of CF509632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
RL11_MEDSA1.029e-6899.2360S ribosomal protein L11 OS=Medicago sativa GN=RP... [more]
RL112_ARATH3.311e-6796.1560S ribosomal protein L11-2 OS=Arabidopsis thalian... [more]
RL111_ARATH3.311e-6796.1560S ribosomal protein L11-1 OS=Arabidopsis thalian... [more]
RL11_ORYSJ6.245e-6694.6260S ribosomal protein L11 OS=Oryza sativa subsp. j... [more]
RL11_ORYSI6.245e-6694.6260S ribosomal protein L11 OS=Oryza sativa subsp. i... [more]
RL11_SCHPO4.960e-5581.7560S ribosomal protein L11 OS=Schizosaccharomyces p... [more]
RL11_NEUCR1.105e-5478.4660S ribosomal protein L11 OS=Neurospora crassa GN=... [more]
RL11_ASHGO3.554e-5380.0060S ribosomal protein L11 OS=Ashbya gossypii GN=RP... [more]
RL11_CAEEL4.642e-5379.5360S ribosomal protein L11 OS=Caenorhabditis elegan... [more]
RL11_RAT1.034e-5277.8660S ribosomal protein L11 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-140 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-7_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509632 ID=CF509632; Name=CF509632; organism=Citrus sinensis; type=EST; length=415bp
CCCTCTGCGATCAGCAAGCAGCAATGGCGTCAGACAAGAAGCTGTCGAAT
CCAATGAGAGAAATAAAAGTGCAAAAGCTGGTCCTCAACATCTCCGTCGG
TGAAAGTGGCGATCGTCTCACACGTGCGGCCAAGGTCCTCGAGCAACTCA
GTGGACAAACCCCCGTCTTCTCCAAGGCGAGATACACTGTGAGGTCATTC
GGAATCAGGCGTAACGAGAAGATTGCTTGTTACGTTACGGTTAGAGGAGA
CAAGGCAATGCAGCTTCTGGAGAGCGGTTTGAAGGTCAAGGAGTACGAGC
TCCTGCGGCGTAACTTCAGCGATACCGGCTGCTTCGGCTTTGGCATTCAG
GAGCACATCGATCTCGGAATCAAGTATGACCCTTCCACAGGTATTTATGG
CATGGACTTCTTTGT
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