CF509635

Overview
NameCF509635
Unique NameCF509635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length451
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF509635 vs. ExPASy Swiss-Prot
Match: VATH_ARATH (V-type proton ATPase subunit H OS=Arabidopsis thaliana GN=VHA-H PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 4.115e-51
Identity = 97/118 (82.20%), Postives = 106/118 (89.83%), Query Frame = 2 
Query:   98 MDHAELTTEQVLKRDIPWETYMTTKLISGTGLQLLRRYDNRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLACEDTYEPFLRLLWKGNW 451
            MD AEL+ EQVLKRDIPWETYM TKL+S  GLQLLRRYD + ES RAQLLD+DGP+YV +FVSILRDI+KEETVEYVLALI EML+ANP RARLFHD+SLA EDTYEPFLRLLWKGNW
Sbjct:    1 MDQAELSIEQVLKRDIPWETYMNTKLVSAKGLQLLRRYDKKPESARAQLLDEDGPAYVHLFVSILRDIFKEETVEYVLALIYEMLSANPTRARLFHDESLANEDTYEPFLRLLWKGNW 118
[Close]
BLAST of CF509635 vs. ExPASy Swiss-Prot
Match: VATH_ORYSJ (Probable V-type proton ATPase subunit H OS=Oryza sativa subsp. japonica GN=Os07g0549700 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.239e-47
Identity = 92/118 (77.97%), Postives = 103/118 (87.29%), Query Frame = 2 
Query:   98 MDHAELTTEQVLKRDIPWETYMTTKLISGTGLQLLRRYDNRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLACEDTYEPFLRLLWKGNW 451
            MDHAELTTEQVLKRDIPWE+YM  KLISGT LQLLRRYD++ ES R  LLD+DGPSYVRVF++ILR+I KE+TVEYVLALIDEML  NPKRA LF+D SL+ ED Y+PFLRLL KGNW
Sbjct:    1 MDHAELTTEQVLKRDIPWESYMANKLISGTCLQLLRRYDHKPESQRGPLLDEDGPSYVRVFLNILRNISKEDTVEYVLALIDEMLAVNPKRAALFYDNSLSGEDIYDPFLRLLLKGNW 118
The following BLAST results are available for this feature:
BLAST of CF509635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
VATH_ARATH4.115e-5182.20V-type proton ATPase subunit H OS=Arabidopsis thal... [more]
VATH_ORYSJ1.239e-4777.97Probable V-type proton ATPase subunit H OS=Oryza s... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-143 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-7_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509635 ID=CF509635; Name=CF509635; organism=Citrus sinensis; type=EST; length=451bp
GAGACAGTGGTGGAAGAAAGAGAAATAAACAAAATTCAGAATTTTGGAGG
TGTTTGAATTGGAGTAATTTTGTGAGGTTTTTAGTATTTTAGTATCAATG
GACCATGCTGAACTTACCACAGAGCAGGTTCTGAAGAGGGACATCCCATG
GGAGACTTACATGACAACGAAGCTGATTTCAGGGACAGGGCTTCAGCTGT
TAAGACGATATGATAACAGATCAGAAAGTCACCGGGCTCAATTGCTGGAT
GATGATGGTCCATCTTATGTCCGGGTGTTTGTTAGCATTTTAAGAGACAT
ATATAAGGAAGAAACAGTGGAATATGTTCTGGCTTTAATTGATGAGATGC
TGACAGCCAATCCAAAGAGAGCCAGATTATTCCATGATAAATCTCTTGCA
TGTGAAGATACTTACGAACCTTTCTTAAGATTGCTGTGGAAAGGTAATTG
G
back to top