CF509639

Overview
NameCF509639
Unique NameCF509639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length371
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4626 contig Csv1_Contig4626:28..398. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF509639 vs. ExPASy Swiss-Prot
Match: RHA1_ARATH (Ras-related protein RHA1 OS=Arabidopsis thaliana GN=RHA1 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.213e-37
Identity = 76/80 (95.00%), Postives = 79/80 (98.75%), Query Frame = 3 
Query:  132 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 371
            MA++GNKNINAKLVLLGDVGAGKSSLVLRFVK QF+EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY
Sbjct:    1 MASSGNKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 80
[Close]
BLAST of CF509639 vs. ExPASy Swiss-Prot
Match: RHN1_NICPL (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.639e-34
Identity = 69/80 (86.25%), Postives = 77/80 (96.25%), Query Frame = 3 
Query:  132 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 371
            MA++ + N+NAKLVLLGD+GAGKSSLV+RFVKGQF+EFQESTIGAAFFS TLAVN+ATVKFEIWDTAGQERYHSLAPMYY
Sbjct:    1 MASSSHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQERYHSLAPMYY 80
[Close]
BLAST of CF509639 vs. ExPASy Swiss-Prot
Match: RAB5_TOBAC (Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.367e-33
Identity = 67/80 (83.75%), Postives = 76/80 (95.00%), Query Frame = 3 
Query:  132 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 371
            MA+  + N+NAKLVLLGD+GAGKSSLV+RFVKGQF+EFQESTIGAAFFS T++VN+ATVKFEIWDTAGQERYHSLAPMYY
Sbjct:    1 MASRRHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVKFEIWDTAGQERYHSLAPMYY 80
[Close]
BLAST of CF509639 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.755e-28
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 3 
Query:  141 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 371
            TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYY
Sbjct:   14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 90
[Close]
BLAST of CF509639 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.755e-28
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 3 
Query:  141 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 371
            TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYY
Sbjct:   14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 90
[Close]
BLAST of CF509639 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.755e-28
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 3 
Query:  141 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 371
            TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYY
Sbjct:   14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 90
[Close]
BLAST of CF509639 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.755e-28
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 3 
Query:  141 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 371
            TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYY
Sbjct:   14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 90
[Close]
BLAST of CF509639 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.755e-28
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 3 
Query:  141 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 371
            TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYY
Sbjct:   14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 90
[Close]
BLAST of CF509639 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.755e-28
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 3 
Query:  141 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 371
            TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYY
Sbjct:   14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 90
[Close]
BLAST of CF509639 vs. ExPASy Swiss-Prot
Match: RAB5C_PONAB (Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.486e-27
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 3 
Query:  144 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 371
            GNK    KLVLLG+   GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYY
Sbjct:   16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 91
The following BLAST results are available for this feature:
BLAST of CF509639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
RHA1_ARATH1.213e-3795.00Ras-related protein RHA1 OS=Arabidopsis thaliana G... [more]
RHN1_NICPL1.639e-3486.25Ras-related protein RHN1 OS=Nicotiana plumbaginifo... [more]
RAB5_TOBAC2.367e-3383.75Ras-related protein Rab5 OS=Nicotiana tabacum GN=R... [more]
RAB5A_PIG1.755e-2879.22Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB5A_MOUSE1.755e-2879.22Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB5A_MACFA1.755e-2879.22Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_HUMAN1.755e-2879.22Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB5A_CANFA1.755e-2879.22Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]
RAB5A_BOVIN1.755e-2879.22Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]
RAB5C_PONAB1.486e-2777.63Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-147 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-7_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509639 ID=CF509639; Name=CF509639; organism=Citrus sinensis; type=EST; length=371bp
GGAAGCTTCTTCCCTTTCCCCTTTGCCCCTTTTACCATATTCTCTTCGTC
AACCCTTCCATTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCA
ATTTTGATTCGGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACA
AAAACATCAATGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAG
TCTAGTCTTGTACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGA
ATCAACCATTGGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATG
CTACTGTAAAATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCAT
AGCTTGGCTCCAATGTACTAT
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