CF509643

Overview
NameCF509643
Unique NameCF509643
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length445
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509643 vs. ExPASy Swiss-Prot
Match: NDUS1_SOLTU (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 3.564e-73
Identity = 134/147 (91.16%), Postives = 142/147 (96.60%), Query Frame = 3
Query:    3 KLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFL 443
            KLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTE+IDVTDAVGSNIRIDSRGPEVMR++PRLNEDINEEWISDKTRF YDGLK QRLNDPMIRGADGRF+AV+WRDALA+VAEVM Q KPEEIVG+AG+LSDAESMMALKD L
Sbjct:  248 KLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTESIDVTDAVGSNIRIDSRGPEVMRVVPRLNEDINEEWISDKTRFFYDGLKRQRLNDPMIRGADGRFQAVSWRDALAIVAEVMHQIKPEEIVGVAGKLSDAESMMALKDLL 394          
BLAST of CF509643 vs. ExPASy Swiss-Prot
Match: NDUS1_ARATH (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=EMB1467 PE=1 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 7.432e-71
Identity = 127/147 (86.39%), Postives = 140/147 (95.24%), Query Frame = 3
Query:    3 KLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFL 443
            KLMTSELSGNVIDICPVGALTSKPFAFKARNWELK TETIDV+DAVGSNIR+DSRGPEVMRI+PRLNEDINEEWISDKTRFCYDGLK QRL+DPMIR +DGRFKAV+WRDALAVV +++ Q KP+EIVG+AG+LSDAESMM LKDF+
Sbjct:  254 KLMTSELSGNVIDICPVGALTSKPFAFKARNWELKATETIDVSDAVGSNIRVDSRGPEVMRIIPRLNEDINEEWISDKTRFCYDGLKRQRLSDPMIRDSDGRFKAVSWRDALAVVGDIIHQVKPDEIVGVAGQLSDAESMMVLKDFV 400          
BLAST of CF509643 vs. ExPASy Swiss-Prot
Match: NDUS1_RECAM (NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Reclinomonas americana GN=NAD11 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 3.038e-48
Identity = 91/148 (61.49%), Postives = 116/148 (78.38%), Query Frame = 3
Query:    3 KLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAK-PEEIVGIAGRLSDAESMMALKDFL 443
            K+  SELSGNVID+CPVGALTSKP+AF AR+WEL+ TE+IDV+DA+GSNIRID RG E+MRILPRLNED+NEEWISDK RFCYDGLK QRLN+P+I+  +G++K V W  A   + + + + +    IVG+ G L D ES++  K+ L
Sbjct:  182 KVFNSELSGNVIDLCPVGALTSKPYAFTARSWELQSTESIDVSDAIGSNIRIDVRGSEIMRILPRLNEDVNEEWISDKARFCYDGLKRQRLNNPIIK-ENGQYKTVTWEKAFNFILKNLQEIQNSNRIVGVVGNLMDVESILLFKELL 328          
BLAST of CF509643 vs. ExPASy Swiss-Prot
Match: NDUS1_MACFA (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Macaca fascicularis GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 3.359e-47
Identity = 92/147 (62.59%), Postives = 113/147 (76.87%), Query Frame = 3
Query:    3 KLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFL 443
            K+  SELSGN+IDICPVGALTSKP+AF AR WE + TE+IDV DAVGSNI + +R  EVMRILPR++EDINEEWISDKTRF YDGLK QRL +PMIR   G     +W DAL+ VA ++   + +++  IAG L DAE+++ALKD L
Sbjct:  212 KMFMSELSGNIIDICPVGALTSKPYAFTARPWETRKTESIDVMDAVGSNIVVSTRTGEVMRILPRMHEDINEEWISDKTRFAYDGLKRQRLTEPMIRNEKGLLTYTSWEDALSRVAGMLQSFQGKDVAAIAGGLVDAEALVALKDLL 358          
BLAST of CF509643 vs. ExPASy Swiss-Prot
Match: NDUS1_PONPY (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pongo pygmaeus GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 4.388e-47
Identity = 91/147 (61.90%), Postives = 113/147 (76.87%), Query Frame = 3
Query:    3 KLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFL 443
            K+  SELSGN+IDICPVGALTSKP+AF AR WE + TE+IDV DAVGSNI + +R  EVMRILPR++EDINEEWISDKTRF YDGLK QRL +PM+R   G     +W DAL+ VA ++   + +++  IAG L DAE+++ALKD L
Sbjct:  212 KMFMSELSGNIIDICPVGALTSKPYAFTARPWETRKTESIDVMDAVGSNIVVSTRTGEVMRILPRMHEDINEEWISDKTRFAYDGLKRQRLTEPMVRNEKGLLTYTSWEDALSRVAGMLQSFQGKDVAAIAGGLVDAEALVALKDLL 358          
BLAST of CF509643 vs. ExPASy Swiss-Prot
Match: NDUS1_PONAB (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pongo abelii GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 4.388e-47
Identity = 91/147 (61.90%), Postives = 113/147 (76.87%), Query Frame = 3
Query:    3 KLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFL 443
            K+  SELSGN+IDICPVGALTSKP+AF AR WE + TE+IDV DAVGSNI + +R  EVMRILPR++EDINEEWISDKTRF YDGLK QRL +PM+R   G     +W DAL+ VA ++   + +++  IAG L DAE+++ALKD L
Sbjct:  212 KMFMSELSGNIIDICPVGALTSKPYAFTARPWETRKTESIDVMDAVGSNIVVSTRTGEVMRILPRMHEDINEEWISDKTRFAYDGLKRQRLTEPMVRNEKGLLTYTSWEDALSRVAGMLQSFQGKDVAAIAGGLVDAEALVALKDLL 358          
BLAST of CF509643 vs. ExPASy Swiss-Prot
Match: NDUS1_HUMAN (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Homo sapiens GN=NDUFS1 PE=1 SV=3)

HSP 1 Score: 186.422 bits (472), Expect = 4.388e-47
Identity = 91/147 (61.90%), Postives = 113/147 (76.87%), Query Frame = 3
Query:    3 KLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFL 443
            K+  SELSGN+IDICPVGALTSKP+AF AR WE + TE+IDV DAVGSNI + +R  EVMRILPR++EDINEEWISDKTRF YDGLK QRL +PM+R   G     +W DAL+ VA ++   + +++  IAG L DAE+++ALKD L
Sbjct:  212 KMFMSELSGNIIDICPVGALTSKPYAFTARPWETRKTESIDVMDAVGSNIVVSTRTGEVMRILPRMHEDINEEWISDKTRFAYDGLKRQRLTEPMVRNEKGLLTYTSWEDALSRVAGMLQSFQGKDVAAIAGGLVDAEALVALKDLL 358          
BLAST of CF509643 vs. ExPASy Swiss-Prot
Match: NDUS1_PANTR (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pan troglodytes GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 5.730e-47
Identity = 91/147 (61.90%), Postives = 113/147 (76.87%), Query Frame = 3
Query:    3 KLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFL 443
            K+  SELSGN+IDICPVGALTSKP+AF AR WE + TE+IDV DAVGSNI + +R  EVMRILPR++EDINEEWISDKTRF YDGLK QRL +PM+R   G     +W DAL+ VA ++   + +++  IAG L DAE+++ALKD L
Sbjct:  212 KMFMSELSGNIIDICPVGALTSKPYAFTARPWETRKTESIDVMDAVGSNIVVSTRTGEVMRILPRMHEDINEEWISDKTRFAYDGLKRQRLTEPMVRNEKGLLTYTSWEDALSRVAGMLQTFQGKDVAAIAGGLVDAEALVALKDLL 358          
BLAST of CF509643 vs. ExPASy Swiss-Prot
Match: NDUS1_BOVIN (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Bos taurus GN=NDUFS1 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 7.484e-47
Identity = 91/147 (61.90%), Postives = 111/147 (75.51%), Query Frame = 3
Query:    3 KLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFL 443
            K+  SELSGN+IDICPVGALTSKP+AF AR WE + TE+IDV DAVGSNI + +R  EVMRILPR++EDINEEWISDKTRF YDGLK QRL +PM+R   G      W DAL+ VA ++   +  ++  IAG L DAE+++ALKD L
Sbjct:  212 KMFMSELSGNIIDICPVGALTSKPYAFTARPWETRKTESIDVMDAVGSNIVVSTRTGEVMRILPRMHEDINEEWISDKTRFAYDGLKRQRLTEPMVRNEKGLLTHTTWEDALSRVAGMLQSFQGNDVAAIAGGLVDAEALIALKDLL 358          
BLAST of CF509643 vs. ExPASy Swiss-Prot
Match: NDUS1_RAT (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Rattus norvegicus GN=Ndufs1 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 9.774e-47
Identity = 91/147 (61.90%), Postives = 112/147 (76.19%), Query Frame = 3
Query:    3 KLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFL 443
            K+  SELSGN+IDICPVGALTSKP+AF AR WE + TE+IDV DAVGSNI + +R  EVMRILPR++EDINEEWISDKTRF YDGLK QRL +PM+R   G     +W DAL+ VA ++   + + +  IAG L DAE+++ALKD L
Sbjct:  212 KMFMSELSGNIIDICPVGALTSKPYAFTARPWETRKTESIDVMDAVGSNIVVSTRTGEVMRILPRMHEDINEEWISDKTRFAYDGLKRQRLTEPMVRNEKGLLTYTSWEDALSRVAGMLQSFEGKAVAAIAGGLVDAEALVALKDLL 358          
The following BLAST results are available for this feature:
BLAST of CF509643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
NDUS1_SOLTU3.564e-7391.16NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_ARATH7.432e-7186.39NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_RECAM3.038e-4861.49NADH-ubiquinone oxidoreductase 75 kDa subunit OS=R... [more]
NDUS1_MACFA3.359e-4762.59NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_PONPY4.388e-4761.90NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_PONAB4.388e-4761.90NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_HUMAN4.388e-4761.90NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_PANTR5.730e-4761.90NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_BOVIN7.484e-4761.90NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_RAT9.774e-4761.90NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-151 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-7_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509643 ID=CF509643; Name=CF509643; organism=Citrus sinensis; type=EST; length=445bp
AAAAACTTATGACAAGTGAACTTTCTGGAAATGTGATAGATATTTGTCCT
GTGGGAGCCCTTACTTCAAAACCTTTCGCATTCAAAGCCCGAAACTGGGA
GTTAAAAGGAACAGAGACCATTGATGTAACTGATGCAGTCGGATCTAACA
TTCGAATAGACAGCAGGGGTCCAGAGGTCATGCGCATCCTCCCGCGGTTA
AATGAGGATATAAACGAAGAATGGATCTCAGACAAGACCCGTTTTTGTTA
TGATGGTTTGAAGAGTCAGAGGCTAAATGATCCAATGATTCGTGGTGCTG
ACGGGCGCTTTAAGGCTGTAAACTGGAGAGATGCCTTGGCTGTGGTTGCT
GAGGTTATGCTTCAGGCTAAACCAGAGGAAATTGTGGGGATAGCTGGTCG
GTTGTCTGATGCAGAATCCATGATGGCACTAAAAGACTTCTTAAA
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