CF509647

Overview
NameCF509647
Unique NameCF509647
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length440
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig131 contig Csv1_Contig131:835..1273. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF509647 vs. ExPASy Swiss-Prot
Match: CO058_MOUSE (UPF0580 protein C15orf58 homolog OS=Mus musculus PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 43/108 (39.81%), Postives = 60/108 (55.56%), Query Frame = 3 
Query:   54 VKPGSFLVSMVSLLNLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRI 377
            + PGS  V  V+ LN+  G   ++RP   R   V Q FD  +FNF K+   EVLF+ +    G     P+ P   +    +V INVSP+E+GHVLL+P   + LPQR+
Sbjct:   87 ILPGS--VGFVAQLNIERGIQ-RRRPQNIR--SVRQEFDPEQFNFNKIRPGEVLFRMQREPKG-----PATP--KQEDDVLVVINVSPLEWGHVLLVPAPAQGLPQRL 182
The following BLAST results are available for this feature:
BLAST of CF509647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CO058_MOUSE4.943e-1139.81UPF0580 protein C15orf58 homolog OS=Mus musculus P... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-155 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-7_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509647 ID=CF509647; Name=CF509647; organism=Citrus sinensis; type=EST; length=440bp
GGAGTGGGAGGACCGCGTACAGAGAGGACTATTTCGCTATGATGTTACTG
CCTGTGAAACCAGGGTCATTCCTGGTCAGTATGGTTTCATTGCTCAACCT
GAACGAGGGCCGCCACCTGAAGAAAAGGCCTACTGAGTTCCGTGTTGATA
AGGTCCTCCAGCCTTTTGATGGGAACAAGTTCAACTTTACCAAAGTGGGG
CAAGAAGAGGTGCTCTTCCAGTTTGAGGCAAGCGAAGATGGTGAAGTCCA
GTTTCACCCAAGTGCCCCCATTGATGTTGAGAATTCTCCAAGTGTTGTTG
CCATCAATGTGAGTCCTATTGAGTACGGGCATGTGCTGTTGATCCCACGA
GTTCTTGAGTGCTTGCCACAGAGGATTGACCGTGATAGCTTCTTGCTCGC
ACTTTACATGGCTGCAGAAGCTGGGAATCCATACTTCAGG
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