CF509648

Overview
NameCF509648
Unique NameCF509648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF509648_ssr7 microsatellite CF509648_ssr7:7..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6998 contig Csv1_Contig6998:163..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509648 vs. ExPASy Swiss-Prot
Match: DOF53_ARATH (Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.808e-29
Identity = 66/117 (56.41%), Postives = 77/117 (65.81%), Query Frame = 2
Query:  254 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCXXXXXXXXXXXXXXQDQPLMSSNTSPLTNFPPLS-YDTN---DLSLAFARLQKQNGG---QLGFDDQ 583
            L+CPRCDSTNTKFCYYNNYSL+QPRYFCKSCRRYWTKGGTLRN+PVGGGC              +  P  +S+   + +    + Y  N   DLSLAFA L KQ+ G   QLGF  +
Sbjct:   55 LRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRSTSSAARSLRTTPEPASHDGKVFSAAGFNGYSNNEHIDLSLAFALLNKQHPGSSSQLGFHSE 171          
BLAST of CF509648 vs. ExPASy Swiss-Prot
Match: DOF21_ARATH (Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 6.869e-29
Identity = 68/128 (53.12%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  260 CPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCXXXXXXXXXXXXXXQDQPLMSSNTSPL-----TNFPPLSYDTN---DLSLAFARLQKQN----GGQLGFDDQHDFSILGN 607
            CPRC+S NTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGC               +   ++ +T PL     T  PP S+  +   DL+LAFA LQK +         F    D SI GN
Sbjct:   50 CPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSSSAFSKNNNNKSINFHTDPLQNPLITGMPPSSFGYDHSIDLNLAFATLQKHHLSSQATTPSFGFGGDLSIYGN 177          
BLAST of CF509648 vs. ExPASy Swiss-Prot
Match: PBF_MAIZE (Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.026e-24
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 2
Query:  254 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGC 403
            LKCPRCDS NTKFCYYNNYS+SQPRYFCK+CRRYWT GGTLRNVP+GGGC
Sbjct:   60 LKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVPIGGGC 109          
BLAST of CF509648 vs. ExPASy Swiss-Prot
Match: DOF56_ARATH (Dof zinc finger protein DOF5.6 OS=Arabidopsis thaliana GN=DOF5.6 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.026e-24
Identity = 45/49 (91.84%), Postives = 49/49 (100.00%), Query Frame = 2
Query:  257 KCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGC 403
            KCPRC+ST+TKFCYYNNYSLSQPRYFCK+CRRYWTKGGTLRN+PVGGGC
Sbjct:   74 KCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGC 122          
BLAST of CF509648 vs. ExPASy Swiss-Prot
Match: DOF57_ARATH (Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana GN=DOF5.7 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.287e-24
Identity = 61/121 (50.41%), Postives = 69/121 (57.02%), Query Frame = 2
Query:  254 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCXXXXXXXXXXXXXXQDQPLMSSNTSPLTN----------------FPPLSYDTNDLSLAFARLQKQNGGQL 568
            LKCPRC+S NTKFCYYNNYSLSQPR+FCKSCRRYWT+GG LRNVP+GGGC                +P  S NT P ++                FPP +  T D  LA   L K N  QL
Sbjct:   41 LKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKSI---------KPNSSMNTLPSSSSSQRFFSSIMEDSSKFFPPPT--TMDFQLAGLSLNKMNDLQL 150          
BLAST of CF509648 vs. ExPASy Swiss-Prot
Match: DOF32_ARATH (Dof zinc finger protein DOF3.2 OS=Arabidopsis thaliana GN=DOF3.2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.986e-24
Identity = 61/120 (50.83%), Postives = 71/120 (59.17%), Query Frame = 2
Query:  254 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGC-XXXXXXXXXXXXXXQDQPLMSSNTSPLTNFPPLSYDTN---------DLSLAFARLQKQNGG---QLGF 574
            L+CPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGG LRN+P+GG                   +P M+ +     +FP  S+  N         +L LA+A L KQ  G    LGF
Sbjct:   40 LRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGILRNIPIGGAYRKHKRSSSATKSLRTTPEPTMTHDGK---SFPTASFGYNNNNISNEQMELGLAYALLNKQPLGVSSHLGF 156          
BLAST of CF509648 vs. ExPASy Swiss-Prot
Match: DOF54_ARATH (Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.482e-23
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 2
Query:  254 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGC 403
            LKCPRC+S NTKFCYYNNY+LSQPR+FCK+CRRYWTKGG LRNVPVGGGC
Sbjct:   51 LKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGC 100          
BLAST of CF509648 vs. ExPASy Swiss-Prot
Match: DOF24_ARATH (Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana GN=DOF2.4 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.482e-23
Identity = 43/50 (86.00%), Postives = 49/50 (98.00%), Query Frame = 2
Query:  254 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGC 403
            LKCPRC+STNTKFCY+NNYSL+QPR+FCK+CRRYWT+GG LRNVPVGGGC
Sbjct:   89 LKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGC 138          
BLAST of CF509648 vs. ExPASy Swiss-Prot
Match: DOF51_ARATH (Dof zinc finger protein DOF5.1 OS=Arabidopsis thaliana GN=DOF5.1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.936e-23
Identity = 43/50 (86.00%), Postives = 49/50 (98.00%), Query Frame = 2
Query:  254 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGC 403
            LKCPRCDSTNTKFCY+NNYSL+QPR+FCK+CRRYWT+GG LR+VPVGGGC
Sbjct:   95 LKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPVGGGC 144          
BLAST of CF509648 vs. ExPASy Swiss-Prot
Match: DOF31_ARATH (Dof zinc finger protein DOF3.1 OS=Arabidopsis thaliana GN=DOF3.1 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.936e-23
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 2
Query:  254 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGG 400
            LKCPRCDS NTKFCYYNNY+LSQPR+FCKSCRRYWTKGG LRNVPVGGG
Sbjct:   29 LKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGG 77          
The following BLAST results are available for this feature:
BLAST of CF509648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DOF53_ARATH1.808e-2956.41Dof zinc finger protein DOF5.3 OS=Arabidopsis thal... [more]
DOF21_ARATH6.869e-2953.13Dof zinc finger protein DOF2.1 OS=Arabidopsis thal... [more]
PBF_MAIZE1.026e-2490.00Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=... [more]
DOF56_ARATH1.026e-2491.84Dof zinc finger protein DOF5.6 OS=Arabidopsis thal... [more]
DOF57_ARATH2.287e-2450.41Dof zinc finger protein DOF5.7 OS=Arabidopsis thal... [more]
DOF32_ARATH2.986e-2450.83Dof zinc finger protein DOF3.2 OS=Arabidopsis thal... [more]
DOF54_ARATH1.482e-2388.00Dof zinc finger protein DOF5.4 OS=Arabidopsis thal... [more]
DOF24_ARATH1.482e-2386.00Dof zinc finger protein DOF2.4 OS=Arabidopsis thal... [more]
DOF51_ARATH1.936e-2386.00Dof zinc finger protein DOF5.1 OS=Arabidopsis thal... [more]
DOF31_ARATH1.936e-2391.84Dof zinc finger protein DOF3.1 OS=Arabidopsis thal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-156 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-7_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509648 ID=CF509648; Name=CF509648; organism=Citrus sinensis; type=EST; length=607bp
AAACCATCTCTCTCTCTCTCTCTCCCTCTTGAGTCTTTCTCTTCAGCTAA
GCTAAGCTTGTCACTCTCTTAGAAAAAAAATTATAAAAATTCAACTTTGT
TTCAATTATTCTGAAGAGTGTTTGATTATTGTTGCATGGATGGATGCTTC
AAGTGGACAACATCAGGAAATGGCTACTTATTCATTGGAAAGCATGTTGG
TTTGCTCAAAAGCACAACAAGAAAGGAAGCCAAGGCCTCAACCGGAACAA
GCTCTCAAATGCCCAAGATGTGACTCCACCAACACAAAATTCTGCTACTA
CAACAACTACAGCCTCTCTCAGCCAAGATACTTCTGCAAATCTTGCAGGA
GGTATTGGACCAAAGGCGGCACACTCAGAAATGTTCCGGTGGGTGGAGGG
TGCAGGAAAAACAAACGGTCGTCATCCTCGTCATCAAAGAGAAGCCAAGA
TCAACCATTGATGAGTTCCAACACAAGCCCTCTCACCAATTTCCCTCCCT
TGAGTTATGACACCAATGACTTGAGTCTTGCATTTGCTAGGCTCCAAAAG
CAAAACGGTGGGCAACTAGGGTTTGACGATCAGCATGATTTTTCTATTTT
GGGGAAC
back to top