CF509653

Overview
NameCF509653
Unique NameCF509653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11947 contig Csv1_Contig11947:422..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509653 vs. ExPASy Swiss-Prot
Match: TTC1_MOUSE (Tetratricopeptide repeat protein 1 OS=Mus musculus GN=Ttc1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20
Identity = 48/118 (40.68%), Postives = 75/118 (63.56%), Query Frame = 2
Query:  152 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRLEPLAXXXXXXXXXXXIGKLKEMGNSILGRFGMSTDTSKL 505
            RS+  SNR    +K  K E +I +C+KA++LNPTY++A++RRAE +EK +  +EA+ D K +LE DPS +QA+   +RL               +GKLK++GN +L  FG+ST+  ++
Sbjct:  154 RSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSVLEKDPSVHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQI 271          
BLAST of CF509653 vs. ExPASy Swiss-Prot
Match: TTC1_HUMAN (Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.050e-20
Identity = 49/118 (41.53%), Postives = 75/118 (63.56%), Query Frame = 2
Query:  152 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRLEPLAXXXXXXXXXXXIGKLKEMGNSILGRFGMSTDTSKL 505
            RSI  SNR    +K  K E +I +C+KA++LNP+Y++A++RRAE +EK +  +EA+ D K ILE DPS +QA+   +RL               +GKLK++GN +L  FG+ST+  ++
Sbjct:  154 RSILFSNRAAARMKQDKKEMAINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSIHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQI 271          
BLAST of CF509653 vs. ExPASy Swiss-Prot
Match: TTC1_BOVIN (Tetratricopeptide repeat protein 1 OS=Bos taurus GN=TTC1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.496e-20
Identity = 48/118 (40.68%), Postives = 75/118 (63.56%), Query Frame = 2
Query:  152 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRLEPLAXXXXXXXXXXXIGKLKEMGNSILGRFGMSTDTSKL 505
            RS+  SNR    +K  K E +I +C+KA++LNP+Y++A++RRAE +EK +  +EA+ D K ILE DPS +QA+   +RL               +GKLK++GN +L  FG+ST+  ++
Sbjct:  154 RSVLFSNRAAARMKQEKKEMAISDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSVHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQI 271          
BLAST of CF509653 vs. ExPASy Swiss-Prot
Match: DNJC7_DICDI (DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.504e-12
Identity = 38/127 (29.92%), Postives = 64/127 (50.39%), Query Frame = 2
Query:   83 KEGQSASEKKEVAPALVPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRLEPLAXXXXXXXXXXXIGKLKEMGNS 463
            K  Q+A +    A ++ P++  + S  +SNR    + L +  E+I +CT A+ ++P Y KA IRRA+   K E++E+A+ D +K    DP N + +R I   +              +G  KE G +
Sbjct:  249 KNYQAAYDSFTEALSIDPKLETMNSQLYSNRAAALVHLNRISEAINDCTSAVTIDPNYGKAYIRRAQCQMKQENYEDAVRDYEKAQSLDPENGELQRNIKEAKIAHKKSLRKDYYKILGVSKEAGET 375          
BLAST of CF509653 vs. ExPASy Swiss-Prot
Match: TOM34_PONAB (Mitochondrial import receptor subunit TOM34 OS=Pongo abelii GN=TOMM34 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.807e-12
Identity = 29/77 (37.66%), Postives = 54/77 (70.13%), Query Frame = 2
Query:  143 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKR 373
            + L S  +SNR +C+L L ++ E++K+CT+AL+L+   +KA  RRA+AH+ L+ ++ + AD+  +L+ +P N  A++
Sbjct:  223 SNLESATYSNRALCYLVLKQYTEAVKDCTEALKLDGKNVKAFYRRAQAHKALKDYKSSFADISNLLQIEPRNGPAQK 299          
BLAST of CF509653 vs. ExPASy Swiss-Prot
Match: TOM34_HUMAN (Mitochondrial import receptor subunit TOM34 OS=Homo sapiens GN=TOMM34 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 7.807e-12
Identity = 29/77 (37.66%), Postives = 54/77 (70.13%), Query Frame = 2
Query:  143 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKR 373
            + L S  +SNR +C+L L ++ E++K+CT+AL+L+   +KA  RRA+AH+ L+ ++ + AD+  +L+ +P N  A++
Sbjct:  223 SNLESATYSNRALCYLVLKQYTEAVKDCTEALKLDGKNVKAFYRRAQAHKALKDYKSSFADISNLLQIEPRNGPAQK 299          
BLAST of CF509653 vs. ExPASy Swiss-Prot
Match: SPAG1_HUMAN (Sperm-associated antigen 1 OS=Homo sapiens GN=SPAG1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 2
Query:  137 EMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRL 388
            E+A+  SI +SNR  C+LK G     I++C +ALEL+P  MK L+RRA A+E LE + +A  D K +L+ D     A  ++ RL
Sbjct:  481 EIADDLSILYSNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLLRRAMAYETLEQYGKAYVDYKTVLQIDCGLQLANDSVNRL 564          
BLAST of CF509653 vs. ExPASy Swiss-Prot
Match: SPAG1_MOUSE (Sperm-associated antigen 1 OS=Mus musculus GN=Spag1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.874e-11
Identity = 29/79 (36.71%), Postives = 55/79 (69.62%), Query Frame = 2
Query:  155 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRLE 391
            +I ++NR    +KL ++  ++++C KALEL+P  +KAL+RRA  ++     +EA+ D++K+L+ +P N+ AK+T+  +E
Sbjct:  246 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVE 324          
BLAST of CF509653 vs. ExPASy Swiss-Prot
Match: FKB70_WHEAT (70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.609e-11
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 2
Query:  146 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRLE 391
            +L+  C+ N   C LKL  ++++ K CTK LEL+   +KAL RRA+A+ +L   E A  D+KK LE DP N   K T   L+
Sbjct:  447 QLKITCNLNNAACKLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAYTQLADLELAEVDIKKALEIDPENRDVKLTYKTLK 528          
BLAST of CF509653 vs. ExPASy Swiss-Prot
Match: TOM34_MOUSE (Mitochondrial import receptor subunit TOM34 OS=Mus musculus GN=Tomm34 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.631e-11
Identity = 27/77 (35.06%), Postives = 55/77 (71.43%), Query Frame = 2
Query:  143 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKR 373
            + L S  +SNR +C L L +++E++K+CT+AL+L+   +KA  RRA+A++ L+ ++ +++D+  +L+ +P N  A++
Sbjct:  223 SSLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLSDISSLLQIEPRNGPAQK 299          
The following BLAST results are available for this feature:
BLAST of CF509653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
TTC1_MOUSE1.202e-2040.68Tetratricopeptide repeat protein 1 OS=Mus musculus... [more]
TTC1_HUMAN2.050e-2041.53Tetratricopeptide repeat protein 1 OS=Homo sapiens... [more]
TTC1_BOVIN3.496e-2040.68Tetratricopeptide repeat protein 1 OS=Bos taurus G... [more]
DNJC7_DICDI3.504e-1229.92DnaJ homolog subfamily C member 7 homolog OS=Dicty... [more]
TOM34_PONAB7.807e-1237.66Mitochondrial import receptor subunit TOM34 OS=Pon... [more]
TOM34_HUMAN7.807e-1237.66Mitochondrial import receptor subunit TOM34 OS=Hom... [more]
SPAG1_HUMAN2.271e-1142.86Sperm-associated antigen 1 OS=Homo sapiens GN=SPAG... [more]
SPAG1_MOUSE3.874e-1136.71Sperm-associated antigen 1 OS=Mus musculus GN=Spag... [more]
FKB70_WHEAT6.609e-1142.6870 kDa peptidyl-prolyl isomerase OS=Triticum aesti... [more]
TOM34_MOUSE8.631e-1135.06Mitochondrial import receptor subunit TOM34 OS=Mus... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-161 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-7_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509653 ID=CF509653; Name=CF509653; organism=Citrus sinensis; type=EST; length=544bp
GGAGGCGTTGTTACAGTATGAGGTAGCTTTGCGAGTGGCATCGGTGCCGG
AGAGAGCGGAATCAGCTTCGGCGCCGGAGGCGAAGGAAGGGCAGTCGGCA
TCGGAGAAGAAGGAAGTGGCGCCGGCGCTGGTGCCGGAAATGGCAGAGCT
GCGTTCCATATGCCATTCGAATCGTGGAATATGCTTTTTGAAGCTTGGAA
AATTCGAGGAGTCTATCAAGGAATGCACAAAGGCGTTGGAGCTTAATCCT
ACATATATGAAAGCTCTGATCAGAAGAGCAGAGGCGCATGAAAAGCTTGA
ACACTTTGAAGAGGCTATTGCTGATATGAAGAAAATCTTGGAATTTGATC
CTTCAAATAATCAAGCCAAGAGAACCATTCTTCGTTTGGAACCACTGGCA
GAAGAAAAACGTGAAAAGATGAAGGAAGAGATGATTGGAAAGCTAAAAGA
AATGGGTAACTCTATCCTGGGCCGTTTTGGGATGAGCACTGACACTTCAA
AGCTGTTAAAGATCCGAACACTGGCGCCTACTCAATATCATTCC
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