CF509657

Overview
NameCF509657
Unique NameCF509657
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length200
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509657 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 7.878e-12
Identity = 24/30 (80.00%), Postives = 29/30 (96.67%), Query Frame = 2
Query:  110 GEALGVDLLNNPDLLATDPVLSFKSAIWFW 199
            G A+GVDLLNNPDL+ATDPV+SFK+A+WFW
Sbjct:  194 GRAIGVDLLNNPDLVATDPVISFKTALWFW 223          

HSP 2 Score: 24.6386 bits (52), Expect = 7.878e-12
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 3
Query:   51 QYYGRGPIQ 77
            QYYGRGPIQ
Sbjct:  175 QYYGRGPIQ 183          

HSP 3 Score: 23.8682 bits (50), Expect = 7.878e-12
Identity = 8/19 (42.11%), Postives = 14/19 (73.68%), Query Frame = 1
Query:   79 LTWNCNYLRCRRSLGGGLV 135
            ++WN NY +C R++G  L+
Sbjct:  184 ISWNYNYGQCGRAIGVDLL 202          
BLAST of CF509657 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 7.882e-12
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 2
Query:  110 GEALGVDLLNNPDLLATDPVLSFKSAIWFW 199
            G A+GVDLLNNPDLLATDP +SFKSA WFW
Sbjct:  199 GRAIGVDLLNNPDLLATDPTISFKSAFWFW 228          

HSP 2 Score: 26.1794 bits (56), Expect = 7.882e-12
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1
Query:   79 LTWNCNYLRCRRSLGGGLV 135
            LTWN NY +C R++G  L+
Sbjct:  189 LTWNYNYGQCGRAIGVDLL 207          

HSP 3 Score: 22.3274 bits (46), Expect = 7.882e-12
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 3
Query:   45 PG-QYYGRGPIQ 77
            PG QY+GRGP+Q
Sbjct:  177 PGKQYFGRGPMQ 188          
The following BLAST results are available for this feature:
BLAST of CF509657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CHI2_PEA7.878e-1280.00Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI1_THECC7.882e-1283.33Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-165 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-7_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509657 ID=CF509657; Name=CF509657; organism=Citrus sinensis; type=EST; length=200bp
GCCATGGGTCCGACTACTGTTATCCTTACTGTCCATGTCCCTTGCCAGGG
CAATACTATGGCCGAGGTCCAATTCAACCTCACTTGGAATTGCAATTACT
TAAGGTGCCGGAGAAGCCTTGGGGGTGGACTTGTTGAACAATCCAGACCT
TCTTGCCACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGA
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