CF509682

Overview
NameCF509682
Unique NameCF509682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509682 vs. ExPASy Swiss-Prot
Match: SYLC_SCHPO (Putative leucyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=SPAC26F1.13c PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 7.620e-61
Identity = 102/169 (60.36%), Postives = 134/169 (79.29%), Query Frame = 3
Query:    3 YHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGS--IEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGN 503
            +  E R+GF  TL WL+QWAC+RS+GLGTR+PWDPQFLVESL+DSTIYMAYYT+ H+LH  D+YG   G+  I+P QMT EVW+ +F   P P++++I    L R+ +EF+Y+YPFD+R SGKDL+ NHLTFC+Y HTAI  +++WP+G R NGH+++N EKMSKSTGN
Sbjct:  577 FSPEVRNGFLKTLDWLSQWACARSYGLGTRLPWDPQFLVESLTDSTIYMAYYTICHLLHS-DVYGKVPGALNIKPEQMTPEVWDHVFRQAPKPKNTSISDEALARLCREFQYFYPFDIRASGKDLVPNHLTFCLYTHTAIFDEKYWPKGIRANGHLLMNGEKMSKSTGN 744          
BLAST of CF509682 vs. ExPASy Swiss-Prot
Match: SYLC_NEUCR (Leucyl-tRNA synthetase, cytoplasmic OS=Neurospora crassa GN=leu-6 PE=3 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 7.380e-56
Identity = 97/173 (56.07%), Postives = 128/173 (73.99%), Query Frame = 3
Query:    3 YHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTG--SIEPGQMTDEVWEFIFCGGPYPE----SSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGN 503
            Y+ + +H F+  +GWL QWAC+R++GLG+++PWDP FLVESLSDST+YMAYYTVAH LH+ D++G   G  +I   QM DEVW++IFC     +     S IP   L+ M++EF+Y+YP D+RVSGKDLI NHLTF +YNH A+  + +WP+  R NGH+ LN EKMSKSTGN
Sbjct:  593 YYADTQHAFKGVIGWLKQWACARTYGLGSKLPWDPNFLVESLSDSTVYMAYYTVAHWLHR-DLFGREKGKGNIGADQMIDEVWDYIFCRTELSDHLVTKSGIPKETLDSMRREFQYFYPLDIRVSGKDLIPNHLTFWLYNHIALFPREYWPKSVRANGHLQLNGEKMSKSTGN 764          
BLAST of CF509682 vs. ExPASy Swiss-Prot
Match: SYLC_DICDI (Leucyl-tRNA synthetase, cytoplasmic OS=Dictyostelium discoideum GN=leuS PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 2.147e-55
Identity = 100/169 (59.17%), Postives = 121/169 (71.60%), Query Frame = 3
Query:    3 YHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGS--IEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGN 503
            Y  E +  FE  LGW+NQWACSRSFGLGT +PWD +FL+ESLSDSTIYMA+YTVAH+L +GD+ GS  GS  I P QMT   W+++  G PYPE   +    L  +K+EF YWYP D+RVSG DLIQNHLTF +Y H AI  ++  P+  R NG + LN EKMSKSTGN
Sbjct:  551 YSAETKKKFEIALGWMNQWACSRSFGLGTHLPWDEKFLIESLSDSTIYMAFYTVAHLL-QGDVNGSKPGSAGITPKQMTSACWDYVLMGKPYPEGCEVSEEKLKELKKEFTYWYPVDIRVSGADLIQNHLTFFLYTHAAIFEKKFQPKSIRANGFVNLNGEKMSKSTGN 718          
BLAST of CF509682 vs. ExPASy Swiss-Prot
Match: SYLC_PONAB (Leucyl-tRNA synthetase, cytoplasmic OS=Pongo abelii GN=LARS PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.701e-52
Identity = 96/170 (56.47%), Postives = 127/170 (74.71%), Query Frame = 3
Query:    9 DENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTG--SIEPGQMTDEVWEFIFC-GGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQR--HWPRGFRCNGHIMLNSEKMSKSTGN 503
            +E R  FE TLGWL + ACSR++GLGT +PWD Q+L+ESLSDSTIYMA+YTVAH+L  G+++G       I P QMT EVW+++F    P+P+ + I    L+++KQEFE+WYP DLRVSGKDL+ NHL++ +YNH A+  ++   WP   R NGH++LNSEKMSKSTGN
Sbjct:  555 EETRRNFEATLGWLQEHACSRTYGLGTHLPWDEQWLIESLSDSTIYMAFYTVAHLLQGGNLHGQAESPLGIRPQQMTKEVWDYVFFKEAPFPK-TQIAKEKLDQLKQEFEFWYPVDLRVSGKDLVPNHLSYYLYNHVAMWPEQSDKWPTAVRANGHLLLNSEKMSKSTGN 723          
BLAST of CF509682 vs. ExPASy Swiss-Prot
Match: SYLC_HUMAN (Leucyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 1.701e-52
Identity = 96/170 (56.47%), Postives = 127/170 (74.71%), Query Frame = 3
Query:    9 DENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTG--SIEPGQMTDEVWEFIFC-GGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQR--HWPRGFRCNGHIMLNSEKMSKSTGN 503
            +E R  FE TLGWL + ACSR++GLGT +PWD Q+L+ESLSDSTIYMA+YTVAH+L  G+++G       I P QMT EVW+++F    P+P+ + I    L+++KQEFE+WYP DLRVSGKDL+ NHL++ +YNH A+  ++   WP   R NGH++LNSEKMSKSTGN
Sbjct:  555 EETRRNFEATLGWLQEHACSRTYGLGTHLPWDEQWLIESLSDSTIYMAFYTVAHLLQGGNLHGQAESPLGIRPQQMTKEVWDYVFFKEAPFPK-TQIAKEKLDQLKQEFEFWYPVDLRVSGKDLVPNHLSYYLYNHVAMWPEQSDKWPTAVRANGHLLLNSEKMSKSTGN 723          
BLAST of CF509682 vs. ExPASy Swiss-Prot
Match: SYLC_MOUSE (Leucyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Lars PE=2 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 2.902e-52
Identity = 97/170 (57.06%), Postives = 127/170 (74.71%), Query Frame = 3
Query:    9 DENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTG--SIEPGQMTDEVWEFIFC-GGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQR--HWPRGFRCNGHIMLNSEKMSKSTGN 503
            +E+R  FE +L WL + ACSR++GLGTR+PWD Q+L+ESLSDSTIYMA+YTVAH+L  GD+ G       I P QMT +VW+++F    P+P+ + IP   L+++KQEFE+WYP DLR SGKDLI NHL++ IYNH A+  ++   WP   R NGH++LNSEKMSKSTGN
Sbjct:  557 EESRKNFEASLDWLQEHACSRTYGLGTRLPWDEQWLIESLSDSTIYMAFYTVAHLLQGGDLNGQAESPLGIRPQQMTKDVWDYVFFKDAPFPK-TQIPKEKLDQLKQEFEFWYPVDLRASGKDLIPNHLSYYIYNHVAMWPEQSDKWPVSVRANGHLLLNSEKMSKSTGN 725          
BLAST of CF509682 vs. ExPASy Swiss-Prot
Match: SYLC_CAEEL (Leucyl-tRNA synthetase OS=Caenorhabditis elegans GN=lrs-1 PE=2 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 3.209e-51
Identity = 95/173 (54.91%), Postives = 124/173 (71.68%), Query Frame = 3
Query:    3 YHDENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTG--SIEPGQMTDEVWEFIFCGGPYPESSNIP--SSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAI--MSQRHWPRGFRCNGHIMLNSEKMSKSTGN 503
            ++DE R G E T+ WL+++ACSRS+GLGT++PWD Q+L+ESLSDSTIY AYYTVAH+L +G   GS  G   I+  QMTD  W ++F G  Y +S  +P     L  +++EF YWYP D+R SGKDLI NHLT+ ++NH AI       WP+G R NGH++LN+EKMSKSTGN
Sbjct:  554 FNDETRRGLETTVDWLHEYACSRSYGLGTKLPWDTQYLIESLSDSTIYNAYYTVAHLLQQGAFDGSVVGPAGIKADQMTDASWSYVFLGEIY-DSKTMPVEEEKLKSLRKEFMYWYPIDMRASGKDLIGNHLTYLLFNHAAIWPTDTSKWPKGIRANGHLLLNNEKMSKSTGN 725          
BLAST of CF509682 vs. ExPASy Swiss-Prot
Match: SYLC_YEAST (Leucyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=CDC60 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 6.052e-50
Identity = 91/166 (54.82%), Postives = 122/166 (73.49%), Query Frame = 3
Query:   12 ENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTG--SIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGN 503
            E ++ FE  L WL  WA  R++GLGTR+PWD ++LVESLSDSTIY ++YT+AH+L K D YG+  G   I   QMTDEV+++IF      +++NIP   L ++++EFEY+YP D+ +SGKDLI NHLTF IY H A+  ++ WP+G R NGH+MLN+ KMSKSTGN
Sbjct:  572 EVKNAFEGVLDWLKNWAVCRTYGLGTRLPWDEKYLVESLSDSTIYQSFYTIAHLLFK-DYYGNEIGPLGISADQMTDEVFDYIFQHQDDVKNTNIPLPALQKLRREFEYFYPLDVSISGKDLIPNHLTFFIYTHVALFPKKFWPKGIRANGHLMLNNSKMSKSTGN 736          
BLAST of CF509682 vs. ExPASy Swiss-Prot
Match: SYLC_ENCCU (Probable leucyl-tRNA synthetase, cytoplasmic OS=Encephalitozoon cuniculi GN=ECU06_0280 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.216e-43
Identity = 81/165 (49.09%), Postives = 110/165 (66.67%), Query Frame = 3
Query:    9 DENRHGFEHTLGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGN 503
            D+ R   E  L W+ +W  SRSFGLGTRIPWD ++L++SLSDSTIYMA YT  H L++ D+ G         +++D+VW +IF      E       IL+  ++ F Y+YP DLRV GKDL++NHL F ++NH A+  ++HWP+    NGH+MLNSEKMSKS+GN
Sbjct:  389 DDTRAILEDGLEWIGKWGFSRSFGLGTRIPWDSEYLIDSLSDSTIYMAMYTFKHFLYR-DLEGKDE-LFPSNRLSDDVWNYIFLNRSITEDLAPYEEILSNCRESFNYFYPIDLRVGGKDLLKNHLIFFLFNHVALFEEKHWPKRMFTNGHLMLNSEKMSKSSGN 551          
BLAST of CF509682 vs. ExPASy Swiss-Prot
Match: SYLC_NOSCE (Probable leucyl-tRNA synthetase, cytoplasmic OS=Nosema ceranae (strain BRL01) GN=NCER_100842 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.085e-42
Identity = 78/155 (50.32%), Postives = 110/155 (70.97%), Query Frame = 3
Query:   39 LGWLNQWACSRSFGLGTRIPWDPQFLVESLSDSTIYMAYYTVAHMLHKGDMYGSTTGSIEPGQMTDEVWEFIFCGGPYPESSNIPSSILNRMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSQRHWPRGFRCNGHIMLNSEKMSKSTGN 503
            + W+N+W  SRSFGLGT+IPWD Q+L++SLSDSTIYMA+YTV H+L + D+ G         +++++VW++IF G            +L + +  F+Y+YP DLRVSGKDLI+NHL F ++NH A+  +++WP+    NGH+MLN EKMSKSTGN
Sbjct:  421 IDWVNKWGFSRSFGLGTKIPWDTQYLIDSLSDSTIYMAFYTVKHLLFE-DLEGKLE-IFPSNKLSNDVWDYIFAGKDLVPELYGYLDLLEKCRNNFQYFYPVDLRVSGKDLIKNHLLFFMFNHVALFDEKYWPKRIFTNGHLMLNKEKMSKSTGN 573          
The following BLAST results are available for this feature:
BLAST of CF509682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SYLC_SCHPO7.620e-6160.36Putative leucyl-tRNA synthetase, cytoplasmic OS=Sc... [more]
SYLC_NEUCR7.380e-5656.07Leucyl-tRNA synthetase, cytoplasmic OS=Neurospora ... [more]
SYLC_DICDI2.147e-5559.17Leucyl-tRNA synthetase, cytoplasmic OS=Dictyosteli... [more]
SYLC_PONAB1.701e-5256.47Leucyl-tRNA synthetase, cytoplasmic OS=Pongo abeli... [more]
SYLC_HUMAN1.701e-5256.47Leucyl-tRNA synthetase, cytoplasmic OS=Homo sapien... [more]
SYLC_MOUSE2.902e-5257.06Leucyl-tRNA synthetase, cytoplasmic OS=Mus musculu... [more]
SYLC_CAEEL3.209e-5154.91Leucyl-tRNA synthetase OS=Caenorhabditis elegans G... [more]
SYLC_YEAST6.052e-5054.82Leucyl-tRNA synthetase, cytoplasmic OS=Saccharomyc... [more]
SYLC_ENCCU3.216e-4349.09Probable leucyl-tRNA synthetase, cytoplasmic OS=En... [more]
SYLC_NOSCE2.085e-4250.32Probable leucyl-tRNA synthetase, cytoplasmic OS=No... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-190 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509682 ID=CF509682; Name=CF509682; organism=Citrus sinensis; type=EST; length=503bp
TATACCATGATGAGAACCGCCATGGCTTTGAGCACACTCTAGGCTGGTTG
AATCAGTGGGCTTGCTCAAGATCGTTTGGGCTTGGGACTCGCATTCCCTG
GGACCCACAGTTCCTGGTCGAGTCATTATCAGATTCAACCATTTATATGG
CGTACTACACAGTAGCCCACATGTTACATAAGGGAGACATGTATGGGAGT
ACTACTGGTTCAATAGAACCTGGTCAAATGACTGATGAGGTCTGGGAATT
TATTTTCTGTGGTGGCCCATATCCAGAATCATCTAATATCCCATCATCTA
TCCTTAACAGGATGAAGCAGGAGTTTGAATATTGGTATCCATTTGATCTT
CGAGTCTCTGGTAAGGACCTCATCCAGAACCACTTAACTTTTTGCATTTA
TAACCACACAGCAATCATGTCCCAGCGCCACTGGCCTCGTGGATTTAGGT
GTAATGGTCACATTATGCTTAATTCTGAGAAGATGTCCAAGTCTACCGGG
AAT
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