CF509699

Overview
NameCF509699
Unique NameCF509699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3244 contig Csv1_Contig3244:11..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509699 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 4.767e-74
Identity = 138/156 (88.46%), Postives = 150/156 (96.15%), Query Frame = 3
Query:  189 DPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 656
            DP+Q   +VKLFNRW+F+DVQ++D+SL DYIGV  +K+ATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLLTDQNPIQVIVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARE+AF
Sbjct:    3 DPTQ--IEVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAF 156          
BLAST of CF509699 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 3.090e-73
Identity = 137/166 (82.53%), Postives = 151/166 (90.96%), Query Frame = 3
Query:  159 MATAVVTQSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 656
            MATA    ++       +VKLFNRWT++DV V DISL DYIGVQAAK+AT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGARE+AF
Sbjct:    1 MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAF 166          
BLAST of CF509699 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.616e-72
Identity = 135/166 (81.33%), Postives = 150/166 (90.36%), Query Frame = 3
Query:  159 MATAVVTQSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 656
            MA +    ++   Q   +VKLFNRW+F+DV V DISL DYIGVQ +K+AT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGARE+AF
Sbjct:    1 MAASAEIDAEIQQQLTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAF 166          
BLAST of CF509699 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 238.424 bits (607), Expect = 2.454e-62
Identity = 115/149 (77.18%), Postives = 134/149 (89.93%), Query Frame = 3
Query:  210 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 656
            D+KLF +W+ +DVQ+NDISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AF
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAF 163          
BLAST of CF509699 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 238.424 bits (607), Expect = 2.454e-62
Identity = 115/149 (77.18%), Postives = 134/149 (89.93%), Query Frame = 3
Query:  210 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 656
            D+KLF +W+ +DVQ+NDISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AF
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAF 163          
BLAST of CF509699 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 238.424 bits (607), Expect = 2.454e-62
Identity = 115/149 (77.18%), Postives = 134/149 (89.93%), Query Frame = 3
Query:  210 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 656
            D+KLF +W+ +DVQ+NDISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AF
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAF 163          
BLAST of CF509699 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 4.186e-62
Identity = 113/148 (76.35%), Postives = 133/148 (89.86%), Query Frame = 3
Query:  213 VKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 656
            VKLFNRW++EDV++ DISL+DYI +   ++  Y+PH+AGRY+ KRFRKA CPI+ERLTNSLMMHGRNNGKKLMAVRIV HA EIIHL+TDQNPIQ+ VDA++N GPRED+TRIGSAG VRRQAVD+SPLRRVNQAI LLTTGARE++F
Sbjct:   28 VKLFNRWSYEDVEIRDISLTDYIQI---RSPVYLPHSAGRYAAKRFRKANCPIIERLTNSLMMHGRNNGKKLMAVRIVAHAFEIIHLMTDQNPIQIAVDAIVNCGPREDSTRIGSAGTVRRQAVDVSPLRRVNQAIALLTTGAREASF 172          
BLAST of CF509699 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 233.802 bits (595), Expect = 6.044e-61
Identity = 113/149 (75.84%), Postives = 132/149 (88.59%), Query Frame = 3
Query:  210 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 656
            D+KLF +W+ +DVQ+NDISL DYI V+  K A Y+PH+AGRY+   FRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AF
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAANGFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAF 163          
BLAST of CF509699 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.317e-59
Identity = 116/166 (69.88%), Postives = 138/166 (83.13%), Query Frame = 3
Query:  159 MATAVVTQSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 656
            + T VV+ ++ P     ++KLF RW+ +DV VNDISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLT SLMM GRNNGKKLMA RIVKH+ EIIHLLT +NP+Q++V A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AF
Sbjct:   28 LETNVVSTTELP-----EIKLFGRWSCDDVTVNDISLQDYISVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAF 187          
BLAST of CF509699 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.789e-58
Identity = 106/149 (71.14%), Postives = 131/149 (87.92%), Query Frame = 3
Query:  210 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 656
            D+KLF +W  E + ++DISL+DYI V+   +A Y+PHTA RY+VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIV+H+ EI+HLLT +NP+Q++ +A+ NSGPRED+TRIG AG VRRQAVD++PLRRVNQAI+LL TGARE++F
Sbjct:   22 DIKLFGKWPLEGLNISDISLTDYIAVKD-NHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREASF 169          
The following BLAST results are available for this feature:
BLAST of CF509699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS5_CICAR4.767e-7488.4640S ribosomal protein S5 (Fragment) OS=Cicer ariet... [more]
RS52_ARATH3.090e-7382.5340S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS51_ARATH2.616e-7281.3340S ribosomal protein S5-1 OS=Arabidopsis thaliana... [more]
RS5_MOUSE2.454e-6277.1840S ribosomal protein S5 OS=Mus musculus GN=Rps5 P... [more]
RS5_HUMAN2.454e-6277.1840S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
RS5_BOVIN2.454e-6277.1840S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=... [more]
RS5_NEUCR4.186e-6276.3540S ribosomal protein S5 OS=Neurospora crassa GN=r... [more]
RS5_RAT6.044e-6175.8440S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS5A_DROME3.317e-5969.8840S ribosomal protein S5a OS=Drosophila melanogast... [more]
RS5_PODCA4.789e-5871.1440S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-207 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509699 ID=CF509699; Name=CF509699; organism=Citrus sinensis; type=EST; length=657bp
GAGCGGCAGCCGATTCTTATTATTCCCTTTTCAAACCCCTTCAGACAAAC
TAACGCACGCTTTCTTTTTCTTCCGCTTTCTTCTCCATCGCTGATCATCT
TGATTGCTTTTTTAGTTCGAAAAACATTGTCTTTTAATATTTTGTTGTGT
TGGTGAGAATGGCGACTGCTGTAGTGACACAATCTCAAGACCCATCACAG
CCTCAATACGATGTGAAACTCTTCAATAGGTGGACTTTCGAGGATGTTCA
GGTCAATGACATTTCATTGAGTGATTATATTGGAGTCCAAGCAGCAAAAA
ATGCAACCTATGTACCTCACACAGCTGGGAGGTACTCAGTGAAGCGGTTT
AGGAAGGCACAGTGCCCAATTGTTGAGAGGCTCACAAACTCACTGATGAT
GCATGGAAGAAACAATGGCAAGAAATTGATGGCCGTCAGGATTGTCAAGC
ACGCCATGGAAATCATTCACCTTTTGACCGACCAGAACCCAATTCAGGTC
ATTGTTGATGCTGTCATCAACAGTGGTCCAAGGGAAGACGCTACCCGCAT
TGGATCTGCTGGTGTTGTTAGGCGTCAGGCAGTTGATATTTCCCCATTGC
GCCGTGTGAATCAAGCAATCTATTTGCTCACCACTGGTGCTCGTGAATCC
GCTTTCC
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