CF509709

Overview
NameCF509709
Unique NameCF509709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length261
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12879 contig Csv1_Contig12879:478..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF509709 vs. ExPASy Swiss-Prot
Match: SCRK_SOLTU (Fructokinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.905e-11
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 LREILKFANACGAITTTKKGAIPALPTESEALNLLKG 111
            L+E+L+F+ ACGAITTTKKGAIPALPTESEAL LLKG
Sbjct:  281 LKEVLRFSCACGAITTTKKGAIPALPTESEALTLLKG 317
[Close]
BLAST of CF509709 vs. ExPASy Swiss-Prot
Match: SCRK4_ARATH (Probable fructokinase-4 OS=Arabidopsis thaliana GN=At3g59480 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.905e-11
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 LREILKFANACGAITTTKKGAIPALPTESEALNLLKG 111
            LRE+L+ ANACGAITTTKKGAIPALPTESE  +LLKG
Sbjct:  289 LREVLRLANACGAITTTKKGAIPALPTESEVQSLLKG 325
The following BLAST results are available for this feature:
BLAST of CF509709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SCRK_SOLTU9.905e-1183.78Fructokinase OS=Solanum tuberosum PE=2 SV=1[more]
SCRK4_ARATH9.905e-1183.78Probable fructokinase-4 OS=Arabidopsis thaliana GN... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-217 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509709 ID=CF509709; Name=CF509709; organism=Citrus sinensis; type=EST; length=261bp
TTGCGGGAGATATTGAAATTTGCAAATGCCTGTGGAGCCATCACTACCAC
CAAGAAGGGAGCAATTCCAGCTCTACCCACAGAGTCTGAAGCTCTCAACT
TACTCAAAGGAGCATAATAATAAACAAAATTATTAGTTCCAAATTTTTTT
TTTTGTTTGTATTTTGAATTTTCTTTTTGTTTCTGCGGAAGTTGCTTTGA
ATTCAATGAAAAGAAGGGGGTTTCTTCTGTATTATTATTAAAAAAAAAAA
AAAAAAAAAAA
back to top