CF509712

Overview
NameCF509712
Unique NameCF509712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig906 contig Csv1_Contig906:1..545. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509712 vs. ExPASy Swiss-Prot
Match: 6PGL4_ORYSI (Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_031067 PE=3 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 3.963e-48
Identity = 91/130 (70.00%), Postives = 109/130 (83.85%), Query Frame = 1
Query:  154 SSDCVRIKASSSMAAENKNKNKNVQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALS 543
            ++DC     +++ AA    K K V +FD+EEDLAVSLAKYTA+LSAK   E+G+FTVVLSGGSLI ++RKL EPPY+DS++W+KWHVFWVDERVVPKDH+DSNYKLA DGFLS+VPI TG VYAINDALS
Sbjct:   57 ATDC-----AAAAAAAGSKKKKEVLIFDAEEDLAVSLAKYTAELSAKLAAERGAFTVVLSGGSLIKNIRKLAEPPYLDSVDWSKWHVFWVDERVVPKDHEDSNYKLALDGFLSKVPIPTGQVYAINDALS 181          
BLAST of CF509712 vs. ExPASy Swiss-Prot
Match: 6PGL4_ORYSJ (Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. japonica GN=Os09g0529100 PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 5.176e-48
Identity = 89/121 (73.55%), Postives = 105/121 (86.78%), Query Frame = 1
Query:  181 SSSMAAENKNKNKNVQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALS 543
            +++ AA    K K V +FD+EEDLAVSLAKYTA+LSAK   E+G+FTVVLSGGSLI ++RKL EPPY+DS++W+KWHVFWVDERVVPKDH+DSNYKLA DGFLS+VPI TG VYAINDALS
Sbjct:   61 AAAAAAAGSKKKKEVLIFDAEEDLAVSLAKYTAELSAKLAAERGAFTVVLSGGSLIKNIRKLAEPPYLDSVDWSKWHVFWVDERVVPKDHEDSNYKLALDGFLSKVPIPTGQVYAINDALS 181          
BLAST of CF509712 vs. ExPASy Swiss-Prot
Match: 6PGL5_ARATH (Probable 6-phosphogluconolactonase 5, chloroplastic OS=Arabidopsis thaliana GN=EMB2024 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.840e-46
Identity = 90/131 (68.70%), Postives = 106/131 (80.92%), Query Frame = 1
Query:  151 KSSDCVRIKASSSMAAENKNKNKNVQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALS 543
            KSSD  R   S +     K + K V+++D EE+L + LAK+TADLS KF KE+G+FTVV+SGGSLI SLRKLVE PYVDSI+WA+WH FWVDERVVPK+HDDSNYKLAYD FLS+VPI  GNVYAIN+ALS
Sbjct:   59 KSSDTRRKVKSMATTNIGKEEKKRVEIYDLEENLVIDLAKFTADLSDKFCKERGAFTVVVSGGSLIKSLRKLVESPYVDSIDWARWHFFWVDERVVPKNHDDSNYKLAYDSFLSKVPIPPGNVYAINEALS 189          
BLAST of CF509712 vs. ExPASy Swiss-Prot
Match: 6PGL3_ORYSJ (Probable 6-phosphogluconolactonase 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0547100 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.082e-37
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = 1
Query:  217 KNVQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALS 543
            K + +FD+EE LA SLAKYTA LS +   E+G+FTV LSGGSLI +LRKL E PY++++EW+KWHVFWVDERVVPKDH DSNYKLA DG LS+VPI    +YAIND LS
Sbjct:   76 KKLLIFDAEEYLAESLAKYTARLSGEAVAERGAFTVALSGGSLIKALRKLTESPYLEAVEWSKWHVFWVDERVVPKDHADSNYKLAMDGLLSKVPIPASQIYAINDTLS 184          
BLAST of CF509712 vs. ExPASy Swiss-Prot
Match: 6PGL3_ORYSI (Probable 6-phosphogluconolactonase 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_30141 PE=3 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.082e-37
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = 1
Query:  217 KNVQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALS 543
            K + +FD+EE LA SLAKYTA LS +   E+G+FTV LSGGSLI +LRKL E PY++++EW+KWHVFWVDERVVPKDH DSNYKLA DG LS+VPI    +YAIND LS
Sbjct:   76 KKLLIFDAEEYLAESLAKYTARLSGEAVAERGAFTVALSGGSLIKALRKLTESPYLEAVEWSKWHVFWVDERVVPKDHADSNYKLAMDGLLSKVPIPASQIYAINDTLS 184          
BLAST of CF509712 vs. ExPASy Swiss-Prot
Match: 6PGL2_ARATH (Probable 6-phosphogluconolactonase 2 OS=Arabidopsis thaliana GN=At3g49360 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.040e-36
Identity = 71/105 (67.62%), Postives = 86/105 (81.90%), Query Frame = 1
Query:  226 QVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDAL 540
            +VF +  ++AV LAKYTADLS+KF KE+G FTVVLSGG LI  L KL+E PY+DSIEW+KWH+FWVDERV   DH DSNYKLAYDGFLS+VP+   N+YAI++ L
Sbjct:    7 RVFKTNNEMAVELAKYTADLSSKFCKERGVFTVVLSGGDLIAWLWKLLEAPYIDSIEWSKWHIFWVDERVCAWDHADSNYKLAYDGFLSKVPVPAENIYAIDNGL 111          
BLAST of CF509712 vs. ExPASy Swiss-Prot
Match: 6PGL4_ARATH (Probable 6-phosphogluconolactonase 4 OS=Arabidopsis thaliana GN=At5g24410 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.848e-35
Identity = 69/109 (63.30%), Postives = 90/109 (82.57%), Query Frame = 1
Query:  205 KNKNKNVQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSQVPITTGNVYAIN 531
            K K+K + VF ++++L+ ++A YTA+LSAKF KE+G FTVVLSGG LI  L +L+EP Y +SIEW+KWH+FWVDERVVP DH+DSNYKLA+DGFLS+VPI   N+Y I+
Sbjct:    7 KTKSKKI-VFPTKKELSEAMATYTANLSAKFCKERGYFTVVLSGGDLISWLSELLEPKYQESIEWSKWHIFWVDERVVPLDHEDSNYKLAFDGFLSKVPIPIANIYPID 114          
BLAST of CF509712 vs. ExPASy Swiss-Prot
Match: 6PGL3_ARATH (Probable 6-phosphogluconolactonase 3 OS=Arabidopsis thaliana GN=At5g24420 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.238e-33
Identity = 69/105 (65.71%), Postives = 85/105 (80.95%), Query Frame = 1
Query:  229 VFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALS 543
            VF ++ +L+ ++A+YTA+LSAKF KEKG FTVVLSGG LID L KLV+PPY+DSIEW KWHVFWVDERV   +  DSNYKLA +GFLS+VPI   N+YAI+  L+
Sbjct:    8 VFPTKNELSEAMAEYTANLSAKFIKEKGLFTVVLSGGDLIDWLCKLVQPPYIDSIEWPKWHVFWVDERVCAWEDPDSNYKLAMEGFLSKVPIPDKNIYAIDKHLA 112          
BLAST of CF509712 vs. ExPASy Swiss-Prot
Match: 6PGL1_ARATH (Probable 6-phosphogluconolactonase 1 OS=Arabidopsis thaliana GN=At1g13700 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.578e-27
Identity = 55/107 (51.40%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  223 VQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALS 543
            ++V ++ E+L++ L  Y A++S    KE G+F +VLSGGSLI  + KL+EPPY   ++WAKW+VFW DERVV K+HDDSNYKLA D  LS+V +   ++ +IND +S
Sbjct:   13 IRVHENLEELSIDLVDYIAEISEASIKEHGAFCIVLSGGSLISFMGKLIEPPYDKIVDWAKWYVFWADERVVAKNHDDSNYKLAKDNLLSKVNVFPRHICSINDTVS 119          
BLAST of CF509712 vs. ExPASy Swiss-Prot
Match: 6PGL1_ORYSJ (Probable 6-phosphogluconolactonase 1 OS=Oryza sativa subsp. japonica GN=Os03g0416500 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.465e-26
Identity = 53/115 (46.09%), Postives = 79/115 (68.70%), Query Frame = 1
Query:  190 MAAENKNKNKNVQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSQVPITTGNVYAIND 534
            +A+    KN  +++F+S +++A  LA+Y + +S    KE+G F + LSGG LI  +RKL E PY  +++W+KW++FW DER V K+H DS YK   + FLS+VPI  G+VY+IND
Sbjct:   23 VASYEPKKNNEIRMFESSDEMATDLAEYISQVSEISIKERGYFAIALSGGPLISFMRKLCEAPYNKTLDWSKWYIFWADERAVAKNHVDSYYKSTKEDFLSKVPILNGHVYSIND 137          
The following BLAST results are available for this feature:
BLAST of CF509712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
6PGL4_ORYSI3.963e-4870.00Probable 6-phosphogluconolactonase 4, chloroplasti... [more]
6PGL4_ORYSJ5.176e-4873.55Probable 6-phosphogluconolactonase 4, chloroplasti... [more]
6PGL5_ARATH2.840e-4668.70Probable 6-phosphogluconolactonase 5, chloroplasti... [more]
6PGL3_ORYSJ1.082e-3767.89Probable 6-phosphogluconolactonase 3, chloroplasti... [more]
6PGL3_ORYSI1.082e-3767.89Probable 6-phosphogluconolactonase 3, chloroplasti... [more]
6PGL2_ARATH2.040e-3667.62Probable 6-phosphogluconolactonase 2 OS=Arabidopsi... [more]
6PGL4_ARATH3.848e-3563.30Probable 6-phosphogluconolactonase 4 OS=Arabidopsi... [more]
6PGL3_ARATH1.238e-3365.71Probable 6-phosphogluconolactonase 3 OS=Arabidopsi... [more]
6PGL1_ARATH6.578e-2751.40Probable 6-phosphogluconolactonase 1 OS=Arabidopsi... [more]
6PGL1_ORYSJ1.465e-2646.09Probable 6-phosphogluconolactonase 1 OS=Oryza sati... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-220 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509712 ID=CF509712; Name=CF509712; organism=Citrus sinensis; type=EST; length=545bp
GGGACGGTCACCACCACTTCGCTCGTCTCTTTCTCCACTTGCTTTCTTCC
AAAATCACTTTATTCCAAAACCCGCTTTCAGTTTCAGTTTCAGTTACTCA
GAAGACCAAACTCACTCCTCCAATTTCGAAACATTTCCCTTGATCGGAAC
AAATCATCGGACTGCGTGAGAATCAAGGCATCATCATCAATGGCTGCCGA
GAATAAGAACAAGAACAAGAACGTACAAGTTTTTGACTCAGAGGAAGATC
TGGCTGTGTCTTTGGCCAAATACACCGCCGATCTATCTGCCAAGTTCGGT
AAAGAGAAGGGCTCCTTCACTGTCGTCTTATCCGGTGGTTCTCTCATCGA
CTCCCTCAGGAAATTAGTGGAACCCCCGTATGTAGATTCAATTGAATGGG
CGAAATGGCATGTGTTTTGGGTTGATGAAAGAGTTGTTCCCAAGGATCAT
GATGATAGCAATTATAAGCTTGCTTATGATGGTTTCCTTTCTCAGGTACC
AATTACCACTGGCAATGTCTATGCCATCAATGATGCATTATCTGC
back to top