CF509772

Overview
NameCF509772
Unique NameCF509772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9908 contig Csv1_Contig9908:662..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF509772 vs. ExPASy Swiss-Prot
Match: NAC78_ARATH (NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.865e-18
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:    1 VLCRIFQKSGSGPKNGEQYGAPFIEEEWEDDEAVDPTLVPGHDVVADELVVSDDAYFETNDLDQNIDVANQSENALRHLNFYHGESSN 264
            VLCRIFQKSG+GPKNGEQYGAP++EEEWE+D     T VP  D  ++ L ++DD Y + +D+D+  +     +      N+ HGESSN
Sbjct:  152 VLCRIFQKSGTGPKNGEQYGAPYLEEEWEED---GMTYVPAQDAFSEGLALNDDVYVDIDDIDEKPENLVVYDAVPILPNYCHGESSN 236
The following BLAST results are available for this feature:
BLAST of CF509772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NAC78_ARATH2.865e-1850.00NAC domain-containing protein 78 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-280 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509772 ID=CF509772; Name=CF509772; organism=Citrus sinensis; type=EST; length=264bp
GTTCTGTGTAGGATATTCCAGAAGAGTGGATCAGGGCCGAAGAATGGGGA
GCAGTATGGGGCACCTTTTATTGAGGAGGAATGGGAGGATGATGAGGCGG
TTGACCCAACTCTTGTACCAGGTCATGACGTGGTTGCTGACGAATTGGTG
GTTAGTGATGATGCATATTTTGAAACGAATGACCTTGATCAGAATATTGA
TGTTGCAAATCAATCTGAAAATGCTCTGCGTCATTTGAACTTCTATCATG
GAGAGTCAAGCAAC
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