CF509776

Overview
NameCF509776
Unique NameCF509776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig914 contig Csv1_Contig914:1..545. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509776 vs. ExPASy Swiss-Prot
Match: BMS1_YEAST (Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae GN=BMS1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.335e-28
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 2
Query:  245 KIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKAVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDMVL 511
            +I KK+KLVG+P KIFK TA IKDMF+S +EVA+ EG  ++TVSGIRG++K+A  +              EG  R  FED+ILMSD+V+
Sbjct:  927 EIVKKLKLVGFPYKIFKNTAFIKDMFSSAMEVARFEGAQIKTVSGIRGEIKRALSKP-------------EGHYRAAFEDKILMSDIVI 1002          

HSP 2 Score: 58.5362 bits (140), Expect = 2.335e-28
Identity = 31/80 (38.75%), Postives = 42/80 (52.50%), Query Frame = 3
Query:    3 PIIVSIGWRRFQTTPVYSIEDRNGRYRMLKYTSRTHELPCHVLGSSCPSSNWVVAVQNLSNKQA--SFRITATAVVLEFN 236
            P+++S+GWRRFQT P+Y+  D   R RMLKYT           G  C  +     VQ ++N      FRI AT +V E +
Sbjct:  844 PLVLSLGWRRFQTLPIYTTTDSRTRTRMLKYTPEHTYCNAAFYGPLCSPNTPFCGVQIVANSDTGNGFRIAATGIVEEID 923          
BLAST of CF509776 vs. ExPASy Swiss-Prot
Match: BMS1_SCHPO (Ribosome biogenesis protein BMS1 homolog OS=Schizosaccharomyces pombe GN=SPBC31E1.06 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.601e-17
Identity = 52/100 (52.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:  209 SNGSRA*VQPEAKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKAVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDMV 508
            + GS   +     I KK+KL G P KIFK TA IK MF+S LEVA+ EG  +RTVSGIRGQVKKA  +E G+              R TFED+ILMSD+V
Sbjct:  853 ATGSVLNIDQSTDIVKKLKLTGVPYKIFKNTAFIKKMFSSPLEVAKFEGANIRTVSGIRGQVKKAVDQEHGH-------------FRATFEDKILMSDIV 939          
BLAST of CF509776 vs. ExPASy Swiss-Prot
Match: BMS1_HUMAN (Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.091e-17
Identity = 55/130 (42.31%), Postives = 72/130 (55.38%), Query Frame = 2
Query:  122 PRSGVLLPLLKLGSCCPEF-IQQTGFI*DYSNGSRA*VQPEAKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKAVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDMV 508
            P+    L +  +    P+F I  TG + D        +    KI KK+KL G+P KIFK T+ IK MF S LEVA+ EG  +RTVSGIRGQ+KKA +               EG  R +FED++LMSD+V
Sbjct:  988 PQGTGFLAIQSVSGIMPDFRIAATGVVLD--------LDKSIKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRAP-------------EGAFRASFEDKLLMSDIV 1096          

HSP 2 Score: 75.485 bits (184), Expect = 1.832e-13
Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 3
Query:    3 PIIVSIGWRRFQTTPVYSIEDRNGRYRMLKYTSRTHELPCHVLGSSCPSSNWVVAVQNLSNKQASFRITATAVVLEFNQ 239
            PII S+GWRRFQT P+Y IED NGR R+LKYT +         G   P     +A+Q++S     FRI AT VVL+ ++
Sbjct:  941 PIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWGPITPQGTGFLAIQSVSGIMPDFRIAATGVVLDLDK 1019          
The following BLAST results are available for this feature:
BLAST of CF509776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BMS1_YEAST2.335e-2851.69Ribosome biogenesis protein BMS1 OS=Saccharomyces ... [more]
BMS1_SCHPO1.601e-1752.00Ribosome biogenesis protein BMS1 homolog OS=Schizo... [more]
BMS1_HUMAN2.091e-1742.31Ribosome biogenesis protein BMS1 homolog OS=Homo s... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-284 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509776 ID=CF509776; Name=CF509776; organism=Citrus sinensis; type=EST; length=543bp
ATCCCATTATTGTTTCTATTGGATGGAGGCGTTTCCAAACTACCCCTGTC
TATTCCATAGAGGACCGTAATGGGCGGTATCGCATGCTGAAATACACCTC
CAGAACACATGAATTGCCTTGCCACGTTCTGGGGTCCTCTTGCCCCTCCT
CAAACTGGGTAGTTGCTGTCCAGAATTTATCCAACAAACAGGCTTCATTT
AGGATTACAGCAACGGCAGTCGTGCTTGAGTTCAACCAGAAGCAAAGATA
AAGAAGAAAATCAAACTGGTTGGTTATCCCTGCAAGATATTCAAGAAAAC
TGCACTTATCAAAGATATGTTTACGTCAGATCTTGAAGTGGCTCAATGTG
AAGGTAAAGCGGTTCGTACCGTCAGTGGAATCCGTGGGCAGGTGAAAAAG
GCTGCTAAAGAAGAGATTGGTAACCAACCCAAAAGAAAGGGAGGGCAACC
CAGAGAAGGGATTGCCAGATGCACCTTTGAGGACAGAATTCTGATGAGCG
ACATGGTTTTATGTGTGGATGGGCTGATGTTGAAATTCCTTGC
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