CF509784

Overview
NameCF509784
Unique NameCF509784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length440
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1912 contig Csv1_Contig1912:36..474. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF509784 vs. ExPASy Swiss-Prot
Match: ACBP2_ARATH (Acyl-CoA-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=ACBP2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.301e-11
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:  121 MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEDNLSITRSNNNNYNEPKRTKDDVVRRRPESARPGGGFGSASRYGVDDRGARK 375
            M DW  L QS+++GL+FSYL+AKLIS+V++FKEDNLS+TR    +  E K   + V  RR +S+   GGFG  +   V ++G+ +
Sbjct:    1 MGDWAQLAQSVILGLIFSYLLAKLISIVVTFKEDNLSLTRHPEESQLEIK--PEGVDSRRLDSS--CGGFGGEADSLVAEQGSSR 81
[Close]
BLAST of CF509784 vs. ExPASy Swiss-Prot
Match: ACBP1_ARATH (Acyl-CoA-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=ACBP1 PE=1 SV=2)

HSP 1 Score: 59.6918 bits (143), Expect = 1.617e-11
Identity = 25/42 (59.52%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:  121 MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEDNLSITRSN 246
            M+DW  L QSI+ GL+F+YL+AKLIS++L+FK++NLS+TR++
Sbjct:    1 MADWYQLAQSIIFGLIFAYLLAKLISILLAFKDENLSLTRNH 42

HSP 2 Score: 28.4906 bits (62), Expect = 1.617e-11
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 2 
Query:  305 NPRGPEADSGRPHDTESMIAEQGSVRNEE 391
            N R  E  +G   +T+S+IAEQGS+R +E
Sbjct:   50 NLRKVETLTGISGETDSLIAEQGSLRGDE 78
The following BLAST results are available for this feature:
BLAST of CF509784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ACBP2_ARATH1.301e-1145.88Acyl-CoA-binding domain-containing protein 2 OS=Ar... [more]
ACBP1_ARATH1.617e-1159.52Acyl-CoA-binding domain-containing protein 1 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-292 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509784 ID=CF509784; Name=CF509784; organism=Citrus sinensis; type=EST; length=440bp
TCTCACAAATCAACCTCGGAAGCATCAATTTGCACCCAAGTTCAAAGGTT
TTAGCCTTGTCTTCCATCCAAAATTTGTCTCATTTTCTAGGGTTAGGGTT
TTCTTTCAGTTACAAAAGCCATGAGTGATTGGCAGCCTCTTCTGCAATCA
ATACTCATAGGCTTACTCTTCTCTTATCTTGTGGCTAAGTTAATCTCTGT
GGTCCTTTCTTTCAAAGAAGATAATCTCTCTATCACTCGCAGTAACAATA
ACAACTACAATGAACCAAAGCGGACTAAAGACGACGTAGTCCGTCGCCGC
CCCGAATCCGCGCGGCCCGGAGGCGGATTCGGGTCGGCCTCACGATACGG
AGTCGATGATCGCGGAGCAAGGAAGCGTGAGGAACGAAGAGAGCTTGCCT
TGCAGTGATGTTGACAGCGATGGTGACGATGATTGGGAGG
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