CF509789

Overview
NameCF509789
Unique NameCF509789
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF509789_ssr1 microsatellite CF509789_ssr1:1..12. BLAST: Citrus ESTs to Prunus persica proteins V1
CF509789_ssr18 microsatellite CF509789_ssr18:18..29. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF509789 vs. ExPASy Swiss-Prot
Match: GLR37_ARATH (Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=GLR3.7 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.716e-31
Identity = 63/101 (62.38%), Postives = 80/101 (79.21%), Query Frame = 2
Query:   62 DWKLQNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEE-HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMAANDVFD 361
            D KL +ITWPGG  E PRGWVIAD+A PL+I VPRR SFV FVTEE + SH++QG+CID+ +EALK VPY VPY FE FG+G S+P+Y+ L++M  + V+D
Sbjct:  431 DEKLGDITWPGGGREKPRGWVIADSADPLKIVVPRRVSFVEFVTEEKNSSHRIQGFCIDVFIEALKFVPYSVPYIFEPFGNGHSSPNYNHLIQMVTDGVYD 531          
BLAST of CF509789 vs. ExPASy Swiss-Prot
Match: GLR32_ARATH (Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 7.459e-27
Identity = 59/112 (52.68%), Postives = 74/112 (66.07%), Query Frame = 2
Query:   26 SLKGKNVSHSQLDWKLQNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMAANDVFD 361
            SL  K  + S  +  L N+TWPGG +ETPRGWV  +N R LRIGVP RASF  FV+    S+KVQGY ID+   A+KL+ Y VP++F LFGDGL NP+++  V      VFD
Sbjct:  428 SLYKKLSNRSSSNQHLNNVTWPGGTSETPRGWVFPNNGRRLRIGVPDRASFKEFVSRLDGSNKVQGYAIDVFEAAVKLISYPVPHEFVLFGDGLKNPNFNEFVNNVTIGVFD 539          
BLAST of CF509789 vs. ExPASy Swiss-Prot
Match: GLR31_ARATH (Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=GLR3.1 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.118e-25
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 2
Query:   26 SLKGKNVSHSQLDWKLQNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEH-DSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMAANDV 355
            S   K  + S  +  L ++TWPGG + TPRGW+  +N R LRIGVP RASF  FV+  +  S+KVQGYCID+   A+KL+ Y VP++F  FGDGL+NP+Y+ LV      V
Sbjct:  426 SFYSKPPNRSSSNQHLNSVTWPGGTSVTPRGWIFRNNGRRLRIGVPDRASFKDFVSRVNGSSNKVQGYCIDVFEAAVKLLSYPVPHEFIFFGDGLTNPNYNELVNKVTTGV 536          
BLAST of CF509789 vs. ExPASy Swiss-Prot
Match: GLR35_ARATH (Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=GLR3.5 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.831e-23
Identity = 48/112 (42.86%), Postives = 71/112 (63.39%), Query Frame = 2
Query:   26 SLKGKNVSHSQLDWKLQNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMAANDVFD 361
            +L  K  + S  D +L  I WPG   + PRGWV  +N +PL+IGVP R S+  + +++ +   V+G+CIDI   A++L+PY VP  + L+GDG  NPSYD L+   A ++FD
Sbjct:  447 TLYSKPSNTSAKDQRLNEIIWPGEVIKPPRGWVFPENGKPLKIGVPNRVSYKNYASKDKNPLGVKGFCIDIFEAAIQLLPYPVPRTYILYGDGKKNPSYDNLISEVAANIFD 558          
BLAST of CF509789 vs. ExPASy Swiss-Prot
Match: GLR34_ARATH (Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.534e-23
Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = 2
Query:   53 SQLDWKLQNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMAANDVFD 361
            S  + +L+ I +PG  T+ PRGWV  +N +PLRIGVP R S+  +V+++ +   V+GYCID+   A++L+PY VP  + L+GDG  NPSYD LV     D FD
Sbjct:  463 STANQRLKGIIYPGEVTKPPRGWVFPNNGKPLRIGVPNRVSYTDYVSKDKNPPGVRGYCIDVFEAAIELLPYPVPRTYILYGDGKRNPSYDNLVNEVVADNFD 565          
BLAST of CF509789 vs. ExPASy Swiss-Prot
Match: GLR31_ORYSJ (Glutamate receptor 3.1 OS=Oryza sativa subsp. japonica GN=GLR3.1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.356e-19
Identity = 43/112 (38.39%), Postives = 65/112 (58.04%), Query Frame = 2
Query:   26 SLKGKNVSHSQLDWKLQNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMAANDVFD 361
            +L  K  + ++   KL ++ WPG     PRGWV  +N   ++IGVP R S+  FV+ + ++  V+G CID+ + A+ L+ Y VPY+F  FG+   NPSY  L+     D FD
Sbjct:  429 TLYKKPANRTRETQKLHDVIWPGETINKPRGWVFPNNGNEIKIGVPDRVSYRQFVSVDSETGMVRGLCIDVFVAAINLLAYPVPYRFVPFGNNRENPSYSELINKIITDDFD 540          
BLAST of CF509789 vs. ExPASy Swiss-Prot
Match: GLR33_ARATH (Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = 2
Query:   68 KLQNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSHKV-QGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMAANDVFD 361
            KL+++ WPG     PRGWV ++N + L+IGVP R S+  FV++   +  + +G+CID+   A+ L+PY VP KF  +G+G  NPSY  +V+M     FD
Sbjct:  440 KLKHVIWPGETFTKPRGWVFSNNGKELKIGVPLRVSYKEFVSQIRGTENMFKGFCIDVFTAAVNLLPYAVPVKFIPYGNGKENPSYTHMVEMITTGNFD 538          
BLAST of CF509789 vs. ExPASy Swiss-Prot
Match: GLR36_ARATH (Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.710e-18
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 2
Query:   68 KLQNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMAANDVFD 361
            KL ++ WPG   + PRGWV ++N R LRIGVP R  F   V+ + +   + G+C+D+ + A+ L+PY VP++   FG+G  NPS   LV++    V+D
Sbjct:  432 KLHSVVWPGHSIKIPRGWVFSNNGRHLRIGVPNRYRFEEVVSVKSNG-MITGFCVDVFIAAINLLPYAVPFELVAFGNGHDNPSNSELVRLITTGVYD 528          
BLAST of CF509789 vs. ExPASy Swiss-Prot
Match: GLR26_ARATH (Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=GLR2.6 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 2
Query:   35 GKNVSHSQLDWKLQNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSH----KVQGYCIDILLEALKLVPYDVPYKFELF--GDGLSNPSYDGLV 334
            G  +SHS    +L+ I WPG     P+GW    NA+ LRI VP++  F  FV    D++     + G+CID+   A++ +PY VPY++  F   DG    SYD +V
Sbjct:  427 GIKISHSS--HRLRPIIWPGDTIFVPKGWEFPTNAKKLRIAVPKKDGFNNFVEVTKDANTNAPTITGFCIDVFDTAMRQMPYAVPYEYIPFETPDGKPRGSYDEMV 530          
BLAST of CF509789 vs. ExPASy Swiss-Prot
Match: GLR25_ARATH (Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=GLR2.5 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.156e-11
Identity = 41/109 (37.61%), Postives = 56/109 (51.38%), Query Frame = 2
Query:   26 SLKGKNVSHSQLDWKLQNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSH----KVQGYCIDILLEALKLVPYDVPYKFELFG--DGLSNPSYDGLV 334
            SL+   VSHS    +L+ I WPG     P+GW    NA+ LRI VP++  F  FV    D +     V G+CID+    +  +PY V Y++  F   DG    SYD +V
Sbjct:  420 SLRVDKVSHSSR--RLRPIIWPGDTIFVPKGWEFPTNAKKLRIAVPKKDGFNNFVEVTKDENTNVPTVTGFCIDVFNTVMSQMPYAVSYEYIPFDTPDGKPRGSYDEMV 526          
The following BLAST results are available for this feature:
BLAST of CF509789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GLR37_ARATH1.716e-3162.38Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=... [more]
GLR32_ARATH7.459e-2752.68Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=... [more]
GLR31_ARATH9.118e-2549.55Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=... [more]
GLR35_ARATH3.831e-2342.86Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=... [more]
GLR34_ARATH8.534e-2346.60Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=... [more]
GLR31_ORYSJ3.356e-1938.39Glutamate receptor 3.1 OS=Oryza sativa subsp. japo... [more]
GLR33_ARATH1.666e-1842.42Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=... [more]
GLR36_ARATH3.710e-1840.82Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=... [more]
GLR26_ARATH1.366e-1237.74Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=... [more]
GLR25_ARATH1.156e-1137.61Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-297 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509789 ID=CF509789; Name=CF509789; organism=Citrus sinensis; type=EST; length=362bp
GAGAGAGAGAGAACTATTCTCTCTCTCTCTTAAAGGGAAAAATGTTAGTC
ATTCCCAACTCGATTGGAAGCTTCAAAATATTACTTGGCCAGGTGGAAAA
ACTGAGACACCACGCGGTTGGGTAATTGCAGATAATGCAAGACCATTGAG
AATTGGAGTGCCAAGGAGAGCCAGCTTTGTTGGATTTGTTACAGAGGAGC
ACGATAGTCATAAAGTCCAAGGATACTGTATTGATATTTTGCTTGAAGCA
CTGAAACTAGTCCCATATGATGTGCCTTACAAATTTGAGCTTTTTGGGGA
TGGTCTGTCCAATCCTAGTTATGATGGGCTTGTGAAAATGGCTGCAAATG
ATGTGTTTGATG
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