CF509791

Overview
NameCF509791
Unique NameCF509791
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF509791 vs. ExPASy Swiss-Prot
Match: DUS3L_ARATH (tRNA-dihydrouridine synthase 3-like OS=Arabidopsis thaliana GN=At4g38890 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.758e-30
Identity = 94/213 (44.13%), Postives = 123/213 (57.75%), Query Frame = 2 
Query:    2 PFLSSEGPCPYGLACRFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAK---SKMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVDESECSPCVPEENNIINDRPLKKAKSENVENCCSVEGD-----NGVSVLEEDTRNNTADTQPAAKIDD---ILPETDGSLKTHSRE-KKLIDFREKLYL 604
            PF++S   C YGL+CRF G+HRD+    G+++   KS E+N  NK+ Q+LLWKNKM F  ADAKLKSLGLLG AK   +  ++  +K Q G+   N + AT        + +   E      +P        RP+KKAKSE+ +N  S  GD     +GV  LEE+T+ N   T  A   D+    + ETD SLK H RE KKLIDFR+KLYL
Sbjct:  149 PFVASGMKCAYGLSCRFLGSHRDIT---GNSDDKEKS-EMNFFNKETQRLLWKNKMTFTNADAKLKSLGLLGHAKKSNAAEEITAEKTQNGM---NGTQATEVAVDSAVSSEHTSEMIQDVDIPGPLETEEVRPMKKAKSEDQKN--SKTGDVGGVYDGVK-LEEETKKNGYPTSKANVEDEDSIKIVETDSSLKLHPREKKKLIDFRDKLYL 351
[Close]
BLAST of CF509791 vs. ExPASy Swiss-Prot
Match: DUS3L_ORYSJ (tRNA-dihydrouridine synthase 3-like OS=Oryza sativa subsp. japonica GN=Os04g0117600 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 7.511e-28
Identity = 81/210 (38.57%), Postives = 106/210 (50.48%), Query Frame = 2 
Query:    2 PFLSSEGPCPYGLACRFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAKSKMKVMEDKEQ------EGVVDSNNSHATN---GNGCMKGTGDSVDESECSPCVPEENNIINDRPLKKAKSENVENCCSVEGDNGVSVLEEDTRNNTADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYL 604
            PF + +  CPYGL CRF GTH+D+   +G+   L +  E+N LNKD+QKLLWKNK KFPKA A++K LGL    KSK     D ++      +G  D N     N      C     + +D SE  P +      +  RP KK+K E+ E      G    +   ED  N +   +P+         TD     H REKK+IDFREKLYL
Sbjct:  133 PFTNLDQLCPYGLTCRFLGTHKDIHAASGN---LSEKHEINALNKDIQKLLWKNKYKFPKASAQIKLLGLKEVIKSKPDAANDDKKVNHDNLDGNDDENKEPLCNPPVNAECDSTLCEELDRSEGEPLIDNSIPCVEPRPTKKSKVESDEIDKHGAGTLNTNTESEDP-NLSNGLEPSNNSSSC--RTDLITTPHLREKKIIDFREKLYL 336
The following BLAST results are available for this feature:
BLAST of CF509791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DUS3L_ARATH2.758e-3044.13tRNA-dihydrouridine synthase 3-like OS=Arabidopsis... [more]
DUS3L_ORYSJ7.511e-2838.57tRNA-dihydrouridine synthase 3-like OS=Oryza sativ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-299 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509791 ID=CF509791; Name=CF509791; organism=Citrus sinensis; type=EST; length=606bp
CCCGTTTTTGAGTTCTGAAGGGCCGTGTCCTTATGGTTTGGCCTGCAGAT
TTTCGGGTACTCATAGAGATGTTGTTGATGTTGCTGGTTCTACAAACACG
CTGCGGAAAAGCTCTGAGGTGAATGGTTTGAACAAAGATGTGCAGAAACT
TTTGTGGAAGAATAAAATGAAATTCCCAAAAGCTGATGCCAAACTCAAAT
CTCTTGGGCTTCTGGGTCCGGCCAAGTCAAAAATGAAAGTGATGGAAGAT
AAAGAGCAAGAAGGTGTAGTTGATTCTAATAATTCTCATGCTACCAACGG
AAATGGTTGCATGAAAGGAACTGGTGACTCAGTGGATGAATCTGAATGCT
CACCCTGTGTTCCAGAAGAGAATAATATTATCAATGATAGGCCATTGAAG
AAAGCAAAATCTGAAAATGTTGAAAATTGTTGCTCTGTTGAAGGGGACAA
TGGTGTGAGTGTATTGGAGGAAGATACTAGGAATAACACTGCAGATACTC
AACCAGCAGCTAAAATTGATGATATACTCCCTGAAACTGATGGAAGTTTA
AAAACACATTCTCGTGAAAAGAAGCTTATTGATTTTAGAGAAAAGCTTTA
TCTTGC
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