CF509796

Overview
NameCF509796
Unique NameCF509796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length337
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF509796_ssr79 microsatellite CF509796_ssr79:79..88. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5357 contig Csv1_Contig5357:7..343. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: AGD5_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.442e-38
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 2
Query:  107 MNEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWL 337
            MNEKANVSKELNARHRKILEGLLK PENRECADCK KGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWL
Sbjct:    1 MNEKANVSKELNARHRKILEGLLKHPENRECADCKTKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWL 77          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: AGD15_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD15 OS=Arabidopsis thaliana GN=AGD15 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.383e-33
Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 2
Query:  107 MNEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWL 337
            MN KA+VSKELNA+H KILE LLK P+NRECADC++K PRWASVNLGIFICMQCSGIHRSLGVHIS+VRS TLDTWL
Sbjct:    1 MNRKASVSKELNAKHSKILEALLKHPDNRECADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHISQVRSITLDTWL 77          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: SMAP1_MOUSE (Stromal membrane-associated protein 1 OS=Mus musculus GN=Smap1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.087e-21
Identity = 41/69 (59.42%), Postives = 58/69 (84.06%), Query Frame = 2
Query:  128 SKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            +++LN +H+ IL  LL+  +N+ CADC+AKGPRWAS N+G+FIC++C+GIHR+LGVHIS+V+S  LD W
Sbjct:   10 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQW 78          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: SMAP1_HUMAN (Stromal membrane-associated protein 1 OS=Homo sapiens GN=SMAP1 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.087e-21
Identity = 41/69 (59.42%), Postives = 58/69 (84.06%), Query Frame = 2
Query:  128 SKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            +++LN +H+ IL  LL+  +N+ CADC+AKGPRWAS N+G+FIC++C+GIHR+LGVHIS+V+S  LD W
Sbjct:   10 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQW 78          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: SMAP2_CHICK (Stromal membrane-associated protein 2 OS=Gallus gallus GN=SMAP2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.958e-19
Identity = 39/63 (61.90%), Postives = 52/63 (82.54%), Query Frame = 2
Query:  146 RHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            R++ +L  LL   EN+ CADC+AKGPRWAS N+G+FIC++C+GIHR+LGVHIS+V+S  LD W
Sbjct:   11 RYQAVLGSLLSEEENKYCADCQAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQW 73          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: SMAP2_MOUSE (Stromal membrane-associated protein 2 OS=Mus musculus GN=Smap2 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.658e-18
Identity = 37/63 (58.73%), Postives = 52/63 (82.54%), Query Frame = 2
Query:  146 RHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            R++ +L  LL   +N+ CADC++KGPRWAS N+G+FIC++C+GIHR+LGVHIS+V+S  LD W
Sbjct:   11 RYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQW 73          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: SMAP2_HUMAN (Stromal membrane-associated protein 2 OS=Homo sapiens GN=SMAP2 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.658e-18
Identity = 37/63 (58.73%), Postives = 52/63 (82.54%), Query Frame = 2
Query:  146 RHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            R++ +L  LL   +N+ CADC++KGPRWAS N+G+FIC++C+GIHR+LGVHIS+V+S  LD W
Sbjct:   11 RYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQW 73          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: SMAP2_BOVIN (Stromal membrane-associated protein 2 OS=Bos taurus GN=SMAP2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.658e-18
Identity = 37/63 (58.73%), Postives = 52/63 (82.54%), Query Frame = 2
Query:  146 RHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            R++ +L  LL   +N+ CADC++KGPRWAS N+G+FIC++C+GIHR+LGVHIS+V+S  LD W
Sbjct:   11 RYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQW 73          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ACAP2_MOUSE (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Mus musculus GN=Acap2 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.165e-18
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 2
Query:  113 EKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            +  N SKE   +    L+ +  +P N  C DC    PRWAS+NLGI +C++CSGIHRSLGVH SKVRS TLDTW
Sbjct:  386 DSGNESKEKLLKGESALQRVQCIPGNTSCCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLDTW 459          
BLAST of CF509796 vs. ExPASy Swiss-Prot
Match: ACAP2_HUMAN (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=ACAP2 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 2.165e-18
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 2
Query:  113 EKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 334
            +  N SKE   +    L+ +  +P N  C DC    PRWAS+NLGI +C++CSGIHRSLGVH SKVRS TLDTW
Sbjct:  386 DSGNESKEKLLKGESALQRVQCIPGNASCCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLDTW 459          
The following BLAST results are available for this feature:
BLAST of CF509796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
AGD5_ARATH1.442e-3897.40Probable ADP-ribosylation factor GTPase-activating... [more]
AGD15_ARATH2.383e-3384.42Probable ADP-ribosylation factor GTPase-activating... [more]
SMAP1_MOUSE6.087e-2159.42Stromal membrane-associated protein 1 OS=Mus muscu... [more]
SMAP1_HUMAN6.087e-2159.42Stromal membrane-associated protein 1 OS=Homo sapi... [more]
SMAP2_CHICK1.958e-1961.90Stromal membrane-associated protein 2 OS=Gallus ga... [more]
SMAP2_MOUSE1.658e-1858.73Stromal membrane-associated protein 2 OS=Mus muscu... [more]
SMAP2_HUMAN1.658e-1858.73Stromal membrane-associated protein 2 OS=Homo sapi... [more]
SMAP2_BOVIN1.658e-1858.73Stromal membrane-associated protein 2 OS=Bos tauru... [more]
ACAP2_MOUSE2.165e-1855.41Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
ACAP2_HUMAN2.165e-1855.41Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-304 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509796 ID=CF509796; Name=CF509796; organism=Citrus sinensis; type=EST; length=337bp
GAGAAATATCACAGAGGGAAAGAGAGGGGAGGGACCGAAAAGACCAGATT
GCCCTCTCAATTCGTGCGAATTTTCATTTCTCTCTCTCGGAGACTGCGAT
CTCACAATGAACGAGAAGGCCAACGTCTCTAAAGAGCTAAACGCTAGACA
CAGGAAGATTCTGGAAGGGCTTCTTAAGTTGCCAGAGAATAGGGAGTGCG
CTGACTGCAAAGCCAAAGGTCCAAGATGGGCTAGTGTGAATTTGGGAATC
TTTATCTGCATGCAATGTTCTGGGATCCACAGGAGTCTTGGTGTACACAT
ATCAAAGGTTAGATCTGCTACCTTGGATACCTGGCTT
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