CF509805

Overview
NameCF509805
Unique NameCF509805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length424
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1290..1713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK_BRARP (S-adenosylmethionine synthetase OS=Brassica rapa subsp. pekinensis GN=SAMS PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.714e-21
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 3 
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  349 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393
[Close]
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK5_BRAJU (S-adenosylmethionine synthetase 5 OS=Brassica juncea GN=MSAMS5 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.714e-21
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 3 
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  349 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393
[Close]
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK3_BRAJU (S-adenosylmethionine synthetase 3 OS=Brassica juncea GN=MSAMS3 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.714e-21
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 3 
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  349 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393
[Close]
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK1_BRAJU (S-adenosylmethionine synthetase 1 OS=Brassica juncea GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.714e-21
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 3 
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  349 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393
[Close]
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK1_ARATH (S-adenosylmethionine synthetase 1 OS=Arabidopsis thaliana GN=SAM1 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.714e-21
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 3 
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  349 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393
[Close]
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK1_DAUCA (S-adenosylmethionine synthetase 1 OS=Daucus carota GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.544e-21
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 3 
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            +INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA
Sbjct:  397 SINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 441
[Close]
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK_MEDTR (S-adenosylmethionine synthetase OS=Medicago truncatula GN=METK PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.046e-21
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 3 
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            TINLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA
Sbjct:  350 TINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 394
[Close]
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK1_SOLTU (S-adenosylmethionine synthetase 1 OS=Solanum tuberosum GN=METK1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.031e-20
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 3 
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 134
            +INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ
Sbjct:  349 SINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 392
[Close]
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK1_ELAUM (S-adenosylmethionine synthetase 1 OS=Elaeagnus umbellata GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.031e-20
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = 3 
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            TINLDLKRGGNGRFLKTA YGHFGRDDPDFTWE+VKPLKWEKPQ+
Sbjct:  349 TINLDLKRGGNGRFLKTAGYGHFGRDDPDFTWEIVKPLKWEKPQS 393
[Close]
BLAST of CF509805 vs. ExPASy Swiss-Prot
Match: METK2_ARATH (S-adenosylmethionine synthetase 2 OS=Arabidopsis thaliana GN=SAM2 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.347e-20
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 3 
Query:    3 TINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 137
            TINLDLKRGGNGRF KTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  349 TINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393
The following BLAST results are available for this feature:
BLAST of CF509805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
METK_BRARP2.714e-2197.78S-adenosylmethionine synthetase OS=Brassica rapa s... [more]
METK5_BRAJU2.714e-2197.78S-adenosylmethionine synthetase 5 OS=Brassica junc... [more]
METK3_BRAJU2.714e-2197.78S-adenosylmethionine synthetase 3 OS=Brassica junc... [more]
METK1_BRAJU2.714e-2197.78S-adenosylmethionine synthetase 1 OS=Brassica junc... [more]
METK1_ARATH2.714e-2197.78S-adenosylmethionine synthetase 1 OS=Arabidopsis t... [more]
METK1_DAUCA3.544e-2197.78S-adenosylmethionine synthetase 1 OS=Daucus carota... [more]
METK_MEDTR6.046e-2197.78S-adenosylmethionine synthetase OS=Medicago trunca... [more]
METK1_SOLTU1.031e-2097.73S-adenosylmethionine synthetase 1 OS=Solanum tuber... [more]
METK1_ELAUM1.031e-2093.33S-adenosylmethionine synthetase 1 OS=Elaeagnus umb... [more]
METK2_ARATH1.347e-2095.56S-adenosylmethionine synthetase 2 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-313 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509805 ID=CF509805; Name=CF509805; organism=Citrus sinensis; type=EST; length=424bp
TGACCATCAATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGAAG
ACTGCTGCCTATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGGGA
AGTTGTGAAGCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGTTG
AAAAGTGAAAACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTGGA
TGAATAATTTGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAATC
TCCTGTGTTCAGAACTCATACATGTTCCCCATTCAATTCCTTTCTTTTTC
TTCTTTCCCCACTTCTTTTTTGGTTTTGGTTTAATGTACCATGTCACCAC
TGTTGTGTAGTGATATCGATTGAGAATTTTGCTCAACTGGTGCCTGGAAT
TAATAAAATTCTTCCTTTTGCTTA
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