CF509806

Overview
NameCF509806
Unique NameCF509806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7432 contig Csv1_Contig7432:30..523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509806 vs. ExPASy Swiss-Prot
Match: M2K2_ARATH (Mitogen-activated protein kinase kinase 2 OS=Arabidopsis thaliana GN=MKK2 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.762e-35
Identity = 78/126 (61.90%), Postives = 93/126 (73.81%), Query Frame = 2
Query:  110 MKKGGLNPNVKLKLSLPSSEEASFTKFLTKSGTFMDGDLLVNKDGVRIVSQTETEAPPLIKPSDNQLNLEDIDTXXXXXXXXXXXXQLVQHKWTGQFFALKGIQMNVEESARRQIAQELKINQSSQ 487
            MKKGG + N  LKL++P + E S TKFLT+SGTF DGDL VNKDGVRI+SQ E E    IKP+D+QL+L D+D             QLVQHKWTGQFFALK IQ+N++E+ R+ IAQELKINQSSQ
Sbjct:    1 MKKGGFSNN--LKLAIPVAGEQSITKFLTQSGTFKDGDLRVNKDGVRIISQLEPEVLSPIKPADDQLSLSDLDMVKVIGKGSSGVVQLVQHKWTGQFFALKVIQLNIDEAIRKAIAQELKINQSSQ 124          
BLAST of CF509806 vs. ExPASy Swiss-Prot
Match: M2K1_ARATH (Mitogen-activated protein kinase kinase 1 OS=Arabidopsis thaliana GN=MKK1 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 8.764e-27
Identity = 68/126 (53.97%), Postives = 84/126 (66.67%), Query Frame = 2
Query:  110 MKKGGLNPNVKLKLSLPSSEEASFTKFLTKSGTFMDGDLLVNKDGVRIVSQTETEAPPLIKPSDNQLNLEDIDTXXXXXXXXXXXXQLVQHKWTGQFFALKGIQMNVEESARRQIAQELKINQSSQ 487
            M +G L PN    + LP  E+ S +KFLT+SGTF DGDL VNKDG++ VS +E  APP I+P DNQL+L D++             QLV+HK T QFFALK IQ+N EES  R I+QEL+IN SSQ
Sbjct:    1 MNRGSLCPN---PICLPPLEQ-SISKFLTQSGTFKDGDLRVNKDGIQTVSLSEPGAPPPIEPLDNQLSLADLEVIKVIGKGSSGNVQLVKHKLTQQFFALKVIQLNTEESTCRAISQELRINLSSQ 122          
BLAST of CF509806 vs. ExPASy Swiss-Prot
Match: M2K1_ORYSJ (Mitogen-activated protein kinase kinase 1 OS=Oryza sativa subsp. japonica GN=MEK1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.184e-23
Identity = 55/124 (44.35%), Postives = 83/124 (66.94%), Query Frame = 2
Query:  122 GLNPNVKLKLSLPSSEEASFTKFLTKSGTFMDGDLLVNKDGVRIVSQTETEAPPL--IKPSDNQLNLEDIDTXXXXXXXXXXXXQLVQHKWTGQFFALKGIQMNVEESARRQIAQELKINQSSQ 487
            G  P+ +LKLS+P+ +E    KFLT SGTF DG+L +N+ G++++S+   + P    +K  D QL+++D++             QLV+HKW G  +ALKGIQMN++E+ R+QI QELKINQ++Q
Sbjct:    3 GKKPHKELKLSVPA-QETPVDKFLTASGTFKDGELRLNQRGLQLISEETADEPQSTNLKVEDVQLSMDDLEMIQVIGKGSGGIVQLVRHKWVGTLYALKGIQMNIQEAVRKQIVQELKINQATQ 125          
BLAST of CF509806 vs. ExPASy Swiss-Prot
Match: M2K6_ARATH (Mitogen-activated protein kinase kinase 6 OS=Arabidopsis thaliana GN=MKK6 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.810e-22
Identity = 53/115 (46.09%), Postives = 75/115 (65.22%), Query Frame = 2
Query:  140 KLKLSLPSSEEASFTKFLTKSGTFMDGDLLVNKDGVRIVSQTETEAPPLIKPSDNQLNLEDIDTXXXXXXXXXXXXQLVQHKWTGQFFALKGIQMNVEESARRQIAQELKINQSS 484
            +LKLS+P+ +E+  + FLT SGTF DGD L+N+ G+R+ S  +       K  D ++  ED++T            QLV+HKW G+FFA+K IQMN++E  R+QI QELKINQ+S
Sbjct:   10 QLKLSVPA-QESPISSFLTASGTFHDGDFLLNQKGLRLTSDEKQSRQSDSKELDFEITAEDLETVKVIGKGSGGVVQLVRHKWVGKFFAMKVIQMNIQEEIRKQIVQELKINQAS 123          
The following BLAST results are available for this feature:
BLAST of CF509806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
M2K2_ARATH1.762e-3561.90Mitogen-activated protein kinase kinase 2 OS=Arabi... [more]
M2K1_ARATH8.764e-2753.97Mitogen-activated protein kinase kinase 1 OS=Arabi... [more]
M2K1_ORYSJ1.184e-2344.35Mitogen-activated protein kinase kinase 1 OS=Oryza... [more]
M2K6_ARATH3.810e-2246.09Mitogen-activated protein kinase kinase 6 OS=Arabi... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-314 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509806 ID=CF509806; Name=CF509806; organism=Citrus sinensis; type=EST; length=492bp
CAAGAAAAGTTTCGCATTCTAAAACCCTAGAGACTTGATTTTTCATCATC
AAAGACTCTGCAACGACGACTTCGCTTCAGAAGAATCATAATAGACACAA
GAGCCGATCATGAAGAAGGGAGGCTTAAACCCTAACGTGAAGCTCAAGCT
CTCTCTCCCTTCTTCTGAGGAAGCCTCTTTCACCAAATTTCTGACCAAGA
GCGGTACGTTCATGGACGGGGATCTGCTCGTTAACAAAGACGGAGTTCGG
ATTGTCTCCCAGACTGAAACTGAAGCTCCACCGCTGATTAAGCCATCTGA
CAACCAGTTGAATTTGGAAGATATAGACACAATTAAAGTTGTTGGAAAGG
GAAGTGGTGGAATTGTGCAATTGGTGCAACACAAATGGACTGGCCAGTTT
TTTGCTTTAAAGGGTATTCAAATGAATGTTGAGGAGTCTGCACGAAGGCA
GATTGCTCAGGAGTTGAAAATTAATCAATCATCTCAATGGCC
back to top