CF509817

Overview
NameCF509817
Unique NameCF509817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig918 contig Csv1_Contig918:1..587. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF509817 vs. ExPASy Swiss-Prot
Match: AP2L4_ARATH (AP2-like ethylene-responsive transcription factor At2g41710 OS=Arabidopsis thaliana GN=At2g41710 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 2.568e-38
Identity = 91/192 (47.40%), Postives = 119/192 (61.98%), Query Frame = 3 
Query:    6 EYFNNAHYGAADDPSTESEYLGGFCIDRKIDLTSYIKWWGPNKTRQADSAKKSLEDGKHAYAEDISSELKKSEWEIRPTEPYQMPRLGVSPGGKKHK-----GSAVSALSILSKSTAYKNFQEKALKKQDS-NTDNDENENKNIVN-KMDYGKAVEKS-TGHDGRSERLGAALGMTGGIVSSAKCIPISSFL 557
            EYF+N HYGA DD  TE ++LG FC++RKIDLT YIKWWG NK RQ +S+ K+ ED   A  ED  +ELK  E     TEPY+ P LGV  G ++ +      S+ SALSILS+S A+K+ +EK LK Q+S N +NDEN N+NI+N + + GKA+EK    H       G ALG    +       P++S L
Sbjct:  196 EYFSNIHYGAGDDRGTEGDFLGSFCLERKIDLTGYIKWWGANKNRQPESSSKASED---ANVEDAGTELKTLEHTSHATEPYKAPNLGVLCGTQRKEKEISSPSSSSALSILSQSPAFKSLEEKVLKIQESCNNENDENANRNIINMEKNNGKAIEKPVVSH-------GVALGGAAALSLQKSMYPLTSLL 377
The following BLAST results are available for this feature:
BLAST of CF509817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AP2L4_ARATH2.568e-3847.40AP2-like ethylene-responsive transcription factor ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-325 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509817 ID=CF509817; Name=CF509817; organism=Citrus sinensis; type=EST; length=588bp
GTTCAGAATACTTCAATAATGCACATTATGGTGCAGCTGATGATCCATCA
ACAGAAAGTGAATATTTAGGTGGCTTTTGCATTGACAGAAAAATTGATCT
AACAAGCTACATCAAGTGGTGGGGGCCGAACAAAACTCGTCAAGCAGATT
CTGCCAAGAAATCATTGGAAGACGGAAAACATGCTTATGCCGAAGACATC
AGTAGTGAACTCAAGAAATCAGAATGGGAGATCCGACCTACTGAACCATA
CCAGATGCCCCGTTTAGGTGTGTCTCCTGGTGGAAAGAAGCATAAAGGGT
CTGCTGTATCAGCTTTGAGCATCCTGTCAAAATCAACTGCCTACAAGAAC
TTCCAAGAGAAAGCATTGAAAAAGCAAGACAGCAACACTGATAATGATGA
AAATGAGAACAAAAATATTGTTAACAAAATGGACTATGGTAAGGCTGTTG
AGAAATCAACGGGTCATGATGGTAGGAGTGAGAGACTTGGAGCTGCACTT
GGAATGACTGGGGGGATTGTCTCTTCAGCGAAATGCATTCCCATTAGCTC
CTTTCTTGTCTGCACCACTTCTGACCAACTATAACACC
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