CF509820

Overview
NameCF509820
Unique NameCF509820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length358
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11303 contig Csv1_Contig11303:236..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF509820 vs. ExPASy Swiss-Prot
Match: SCL4_ARATH (Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.362e-26
Identity = 58/101 (57.43%), Postives = 80/101 (79.21%), Query Frame = 3 
Query:   54 ELAQPLTKALIDCARLVESEPDKAVKSLVRLRGSVCAHGNPTERVAYYFTEALYKRLTQRAEKSITTLEANCEDCILSFKTLNDACPYSKFAYLTANQAIL 356
            +L  PL KA+ DCAR+ +S+P++A K+L+++R SV   G+PTERVA+YFTEAL  RL+  +  + ++  ++ ED ILS+KTLNDACPYSKFA+LTANQAIL
Sbjct:  212 DLEPPLLKAIYDCARISDSDPNEASKTLLQIRESVSELGDPTERVAFYFTEALSNRLSPNS-PATSSSSSSTEDLILSYKTLNDACPYSKFAHLTANQAIL 311
[Close]
BLAST of CF509820 vs. ExPASy Swiss-Prot
Match: SCL7_ARATH (Scarecrow-like protein 7 OS=Arabidopsis thaliana GN=SLC7 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.058e-20
Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = 3 
Query:   54 ELAQPLTKALIDCARLVESEPDKAVKSLVRLRGSVCAHGNPTERVAYYFTEALYKRLTQRAEKSITTLEANCEDCILSFKTLNDACPYSKFAYLTANQAIL 356
            +L QP+ KA+ D AR  E++PD    +L+R++ SV   G+P +RV YYF EAL  + T+    S ++   + ED ILS+KTLNDACPYSKFA+LTANQAIL
Sbjct:  172 DLNQPIFKAIHDYARKPETKPD----TLIRIKESVSESGDPIQRVGYYFAEALSHKETESPSSSSSS---SLEDFILSYKTLNDACPYSKFAHLTANQAIL 265
The following BLAST results are available for this feature:
BLAST of CF509820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SCL4_ARATH6.362e-2657.43Scarecrow-like protein 4 OS=Arabidopsis thaliana G... [more]
SCL7_ARATH3.058e-2052.48Scarecrow-like protein 7 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-328 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509820 ID=CF509820; Name=CF509820; organism=Citrus sinensis; type=EST; length=358bp
CGCCCCCAAACGACGCCGTTGGCGCCTCAACCTCAACCGGCTTTGCTGAA
GCTGAATTGGCACAGCCACTAACAAAGGCTTTAATTGACTGCGCTCGCCT
CGTCGAATCAGAACCAGACAAAGCCGTGAAGTCTCTTGTAAGACTCAGAG
GATCAGTGTGTGCTCACGGAAATCCAACTGAAAGAGTGGCGTATTACTTC
ACTGAAGCGTTGTATAAGAGATTGACTCAACGAGCGGAGAAATCGATAAC
GACGTTGGAGGCTAACTGTGAGGATTGCATTCTCTCTTTCAAGACCCTCA
ACGATGCTTGCCCATACTCAAAATTTGCTTATTTAACAGCCAATCAAGCA
ATACTCGA
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