CF509837

Overview
NameCF509837
Unique NameCF509837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509837 vs. ExPASy Swiss-Prot
Match: BTAF1_HUMAN (TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 9.116e-62
Identity = 109/169 (64.50%), Postives = 139/169 (82.25%), Query Frame = 1
Query:    1 LQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGRPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLS 507
            L Y G   +RI L+ Q  +HN+I+ SYDVVR D D+   + +NYCILDEGH+IKN K+K++ AVKQL A +R+ILSGTPIQNN+ +LWSLFDFLMPGFLGTERQF A YG+P++A+RD++ S+++ EAGVLAM+ALH+QV+PFLLRR K++VL DLP KIIQD YC LS
Sbjct: 1357 LHYTGPPTERIRLQHQVKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLS 1525          
BLAST of CF509837 vs. ExPASy Swiss-Prot
Match: MOT1_SCHPO (Probable helicase mot1 OS=Schizosaccharomyces pombe GN=mot1 PE=1 SV=4)

HSP 1 Score: 227.639 bits (579), Expect = 2.483e-59
Identity = 102/167 (61.08%), Postives = 136/167 (81.44%), Query Frame = 1
Query:    7 YVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGRPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLS 507
            YVG   +R  +R +  K +V++TSYD+ R D D L ++ WNYC+LDEGH+IKN+++K+T AVK L++ HRLILSGTPIQNN+ +LWSLFDFLMPGFLGTE+ FQ  + RP+ A+RD+K S+K+ E G LA+EA+HKQV+PF+LRR K++VL+DLP KIIQD YCD+S
Sbjct: 1449 YVGPPAERAKIRSKMKKSDVVVTSYDICRNDVDELVKIDWNYCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKTFQERFVRPIAASRDAKSSSKERERGTLALEAIHKQVLPFMLRRLKEDVLADLPPKIIQDYYCDMS 1615          
BLAST of CF509837 vs. ExPASy Swiss-Prot
Match: MOT1_YEAST (TATA-binding protein-associated factor MOT1 OS=Saccharomyces cerevisiae GN=MOT1 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.043e-57
Identity = 104/166 (62.65%), Postives = 132/166 (79.52%), Query Frame = 1
Query:    7 YVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGRPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDL 504
            Y G    R+ LR Q    ++I+TSYDV R D   L +  +NYC+LDEGHIIKNS+SK+  AVK++ A HRLIL+GTPIQNN+ +LWSLFDFLMPGFLGTE+ FQ  + +P+ A+R+SK S+K+ EAGVLA+EALHKQV+PF+LRR K++VLSDLP KIIQD YC+L
Sbjct: 1363 YAGGPTVRLTLRPQLSDADIIVTSYDVARNDLAVLNKTEYNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPIQNNVLELWSLFDFLMPGFLGTEKMFQERFAKPIAASRNSKTSSKEQEAGVLALEALHKQVLPFMLRRLKEDVLSDLPPKIIQDYYCEL 1528          
BLAST of CF509837 vs. ExPASy Swiss-Prot
Match: RHP26_SCHPO (DNA repair protein rhp26 OS=Schizosaccharomyces pombe GN=rhp26 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.266e-28
Identity = 62/153 (40.52%), Postives = 94/153 (61.44%), Query Frame = 1
Query:   49 FDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGRPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLS 507
            F + +++IT+Y  +R   D +    W YC+LDEGH I+N  S+I+++ KQ++  +R+ILSGTPIQNN+T+LW+LFDF+ PG LGT   FQ  +  P+     +  S    +        L   + P+LLRR K +V +DLP+K  Q  +C L+
Sbjct:  410 FTRGHILITTYAGLRIYGDLILPREWGYCVLDEGHKIRNPDSEISISCKQIRTVNRIILSGTPIQNNLTELWNLFDFVFPGRLGTLPVFQNQFALPINIGGYANASNVQVQTAYKCACMLRDLISPYLLRRMKLDVAADLPKKSEQVLFCKLT 562          
BLAST of CF509837 vs. ExPASy Swiss-Prot
Match: RAD26_YEAST (DNA repair and recombination protein RAD26 OS=Saccharomyces cerevisiae GN=RAD26 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.866e-28
Identity = 63/149 (42.28%), Postives = 93/149 (62.42%), Query Frame = 1
Query:   61 NVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGRPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLS 507
            +++IT+Y  +R  +D L ++ W Y +LDEGH I+N  S+I++  K+LK  +R+ILSGTPIQNN+T+LWSLFDF+ PG LGT   FQ  +  P+     +  +    + G     AL   + P+LLRR K +V  DLP+K     +C L+
Sbjct:  442 HILITTYVGLRIHSDKLLKVKWQYAVLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELWSLFDFIFPGKLGTLPVFQQQFVIPINIGGYANATNIQVQTGYKCAVALRDLISPYLLRRVKADVAKDLPQKKEMVLFCKLT 590          
BLAST of CF509837 vs. ExPASy Swiss-Prot
Match: ERCC6_HUMAN (DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.522e-27
Identity = 62/159 (38.99%), Postives = 90/159 (56.60%), Query Frame = 1
Query:   37 LREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGRPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLS--DLPEKIIQDRYCDLS 507
            +R+    H ++ITSY  +R   D + +  W+Y ILDEGH I+N  + +T+A KQ +  HR+ILSG+P+QNN+ +LWSLFDF+ PG LGT   F   +  P+     S  S    +        L   + P+LLRR K +V     LP+K  Q  +C L+
Sbjct:  611 IRDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLT 769          
BLAST of CF509837 vs. ExPASy Swiss-Prot
Match: Y018_MYCGE (Uncharacterized ATP-dependent helicase MG018 OS=Mycoplasma genitalium GN=MG018 PE=3 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 3.618e-26
Identity = 61/165 (36.97%), Postives = 99/165 (60.00%), Query Frame = 1
Query:   13 GSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGRPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLS 507
            G+ ++R  + E   K+ +++ S++V+R D  ++ Q  ++Y ++DE   IKN  S +T A K++K    L L+GTPI+N + DLWS FDF++P FLG ++QF   +               + E    + + L K+  PF+LRRTK++VL +LP+KII D Y +LS
Sbjct:  660 GNFKERSQVYESL-KNQILLMSFNVLRSDIKWISQKKFHYVVIDEAQGIKNENSTVTKAAKKIKGNFCLALTGTPIENRLLDLWSCFDFVLPNFLGNKKQFSDQF---------------EKEKNDESFQKLMKKTSPFILRRTKNKVLKELPKKIITDIYVELS 808          
BLAST of CF509837 vs. ExPASy Swiss-Prot
Match: INO80_CANGA (Putative DNA helicase INO80 OS=Candida glabrata GN=INO80 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.053e-25
Identity = 67/179 (37.43%), Postives = 97/179 (54.19%), Query Frame = 1
Query:    1 LQYVGSAQDRIALREQFDKHN----------VIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGRPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLS 507
            L Y GSA DR  LR+ +D+ N          V+ITSY +V  DA YL ++ W Y ILDE   IK+S+S     +      +RL+L+GTPIQNN+ +LW+L  F+MP    +  +F   + R + +  +   S    +     +  LH  + PF+LRR K  V S+L +KI  D  CDL+
Sbjct:  800 LPYWGSANDRKVLRKFWDRKNLRYSEKSPFHVMITSYQMVVADASYLQKMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSHDEFNEWFSRDIESHAEGNSSLNQQQ-----LRRLHMILKPFMLRRIKKNVQSELGDKIEIDVMCDLT 973          
BLAST of CF509837 vs. ExPASy Swiss-Prot
Match: BRM_DROME (ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.053e-25
Identity = 67/172 (38.95%), Postives = 97/172 (56.40%), Query Frame = 1
Query:    1 LQYVGSAQDRIALREQF--DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKIT-VAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGRPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLS 507
            + Y GS Q R  L+ Q    K NV++T+Y+ V KD   L ++ W Y I+DEGH +KN   K+T V      A +RL+L+GTP+QN + +LW+L +FL+P    +   F+  +  P  A    K    + E  +L +  LHK + PFLLRR K EV   LP+K+     CD+S
Sbjct:  851 VSYKGSPQGRRLLQNQMRATKFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPF-ATTGEKVELNEEET-ILIIRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMS 1020          
BLAST of CF509837 vs. ExPASy Swiss-Prot
Match: INO80_COCIM (Putative DNA helicase INO80 OS=Coccidioides immitis GN=INO80 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.796e-25
Identity = 62/179 (34.64%), Postives = 101/179 (56.42%), Query Frame = 1
Query:    1 LQYVGSAQDRIALREQFDKHN----------VIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGRPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLS 507
            L Y GSA+DR  LR+ +D+ N          V++TSY +V  DA Y  ++ W Y ILDE   IK+S+S    ++  +   +RL+L+GTPIQNN+ +LW+L  F+MP    +  +F   + + + +   S     + +     ++ LH  + PF+LRR K  V  +L +K+ +D +CDL+
Sbjct:  874 LPYWGSAKDRKVLRKFWDRRNITYRKQSEFHVLVTSYQLVVGDAQYFQKIKWQYMILDEAQAIKSSQSSRWKSLLGMHCRNRLLLTGTPIQNNMQELWALLHFIMPTLFDSHDEFSEWFSKDIESHAQSNTKLNEDQ-----LKRLHMILKPFMLRRIKKHVQKELGDKVEKDVFCDLT 1047          
The following BLAST results are available for this feature:
BLAST of CF509837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
BTAF1_HUMAN9.116e-6264.50TATA-binding protein-associated factor 172 OS=Homo... [more]
MOT1_SCHPO2.483e-5961.08Probable helicase mot1 OS=Schizosaccharomyces pomb... [more]
MOT1_YEAST1.043e-5762.65TATA-binding protein-associated factor MOT1 OS=Sac... [more]
RHP26_SCHPO2.266e-2840.52DNA repair protein rhp26 OS=Schizosaccharomyces po... [more]
RAD26_YEAST3.866e-2842.28DNA repair and recombination protein RAD26 OS=Sacc... [more]
ERCC6_HUMAN9.522e-2738.99DNA excision repair protein ERCC-6 OS=Homo sapiens... [more]
Y018_MYCGE3.618e-2636.97Uncharacterized ATP-dependent helicase MG018 OS=My... [more]
INO80_CANGA1.053e-2537.43Putative DNA helicase INO80 OS=Candida glabrata GN... [more]
BRM_DROME1.053e-2538.95ATP-dependent helicase brm OS=Drosophila melanogas... [more]
INO80_COCIM1.796e-2534.64Putative DNA helicase INO80 OS=Coccidioides immiti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-345 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509837 ID=CF509837; Name=CF509837; organism=Citrus sinensis; type=EST; length=507bp
CTCCAATATGTTGGTTCAGCCCAAGATCGCATTGCTCTTAGAGAACAATT
TGATAAGCATAATGTCATCATTACATCATATGATGTGGTCCGTAAAGATG
CCGATTATCTTGGACAATTACTTTGGAATTACTGTATTCTTGACGAAGGG
CATATCATCAAGAACTCCAAGTCTAAAATTACAGTTGCAGTAAAGCAGCT
GAAAGCAGCACACCGACTAATACTTAGTGGAACACCCATTCAGAATAACA
TCACAGATTTGTGGTCCCTTTTTGATTTTCTAATGCCAGGGTTTCTTGGA
ACAGAGAGACAATTCCAAGCTACTTATGGGAGGCCACTGGTGGCGGCTAG
AGATTCTAAATGTTCTGCCAAAGATGCTGAAGCTGGGGTACTTGCTATGG
AAGCATTGCATAAGCAGGTCATGCCGTTCCTGCTCCGTCGGACAAAAGAT
GAAGTTCTTTCTGACCTTCCAGAAAAGATAATTCAGGACAGATACTGTGA
TCTGAGT
back to top