CF509845

Overview
NameCF509845
Unique NameCF509845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13761 contig Csv1_Contig13761:22..507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS263_ARATH (40S ribosomal protein S26-3 OS=Arabidopsis thaliana GN=RPS26C PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.419e-29
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 1
Query:   97 KFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSH 288
            K IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+GYTLPKLYAK QYCVSCAIHSH
Sbjct:   19 KPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSH 82          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS262_ARATH (40S ribosomal protein S26-2 OS=Arabidopsis thaliana GN=RPS26B PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 3.160e-29
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = 1
Query:  103 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSH 288
            IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+GYTLPKLYAK QYCVSCAIHSH
Sbjct:   21 IRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSH 82          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS261_ARATH (40S ribosomal protein S26-1 OS=Arabidopsis thaliana GN=RPS26A PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 3.160e-29
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = 1
Query:  103 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSH 288
            IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+GYTLPKLYAK QYCVSCAIHSH
Sbjct:   21 IRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSH 82          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26_ORYSJ (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica GN=RPS26 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 3.493e-28
Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 1
Query:   97 KFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSH 288
            K+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+DGY LPKLYAK+ +CVSCAIH+H
Sbjct:   19 KYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAH 82          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26_OCTVU (40S ribosomal protein S26 OS=Octopus vulgaris GN=RPS26 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.193e-22
Identity = 45/63 (71.43%), Postives = 55/63 (87.30%), Query Frame = 1
Query:   97 KFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 285
            K+IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A VY+ Y LPKLYAK+ YCVSCAIHS
Sbjct:   19 KYIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYEVYALPKLYAKLLYCVSCAIHS 81          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26_CAEEL (40S ribosomal protein S26 OS=Caenorhabditis elegans GN=rps-26 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.864e-22
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 1
Query:  100 FIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 285
            FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y  Y LPKLY K+ YC++CAIHS
Sbjct:   20 FIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYALPKLYHKLHYCIACAIHS 81          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26_DROME (40S ribosomal protein S26 OS=Drosophila melanogaster GN=RpS26 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 1
Query:   97 KFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 285
            K +RC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA ++D Y LPKLYAK+ YCVSCAIHS
Sbjct:   19 KPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSCAIHS 81          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26_ANOGA (40S ribosomal protein S26 OS=Anopheles gambiae GN=RpS26 PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 1
Query:   97 KFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 285
            K +RC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A VY  Y LPKLYAK+ YCVSCAIHS
Sbjct:   19 KAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYSSYVLPKLYAKLHYCVSCAIHS 81          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26_RAT (40S ribosomal protein S26 OS=Rattus norvegicus GN=Rps26 PE=3 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 6.381e-22
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 1
Query:  103 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 285
            IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:   21 IRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CF509845 vs. ExPASy Swiss-Prot
Match: RS26_PIG (40S ribosomal protein S26 OS=Sus scrofa GN=RPS26 PE=3 SV=4)

HSP 1 Score: 103.219 bits (256), Expect = 6.381e-22
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 1
Query:  103 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 285
            IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:   21 IRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
The following BLAST results are available for this feature:
BLAST of CF509845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS263_ARATH2.419e-2990.6340S ribosomal protein S26-3 OS=Arabidopsis thalian... [more]
RS262_ARATH3.160e-2991.9440S ribosomal protein S26-2 OS=Arabidopsis thalian... [more]
RS261_ARATH3.160e-2991.9440S ribosomal protein S26-1 OS=Arabidopsis thalian... [more]
RS26_ORYSJ3.493e-2884.3840S ribosomal protein S26 OS=Oryza sativa subsp. j... [more]
RS26_OCTVU2.193e-2271.4340S ribosomal protein S26 OS=Octopus vulgaris GN=R... [more]
RS26_CAEEL2.864e-2270.9740S ribosomal protein S26 OS=Caenorhabditis elegan... [more]
RS26_DROME4.886e-2269.8440S ribosomal protein S26 OS=Drosophila melanogast... [more]
RS26_ANOGA4.886e-2269.8440S ribosomal protein S26 OS=Anopheles gambiae GN=... [more]
RS26_RAT6.381e-2272.1340S ribosomal protein S26 OS=Rattus norvegicus GN=... [more]
RS26_PIG6.381e-2272.1340S ribosomal protein S26 OS=Sus scrofa GN=RPS26 P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-353 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509845 ID=CF509845; Name=CF509845; organism=Citrus sinensis; type=EST; length=487bp
GAAACAACAAGCAGCAGCGGCGCAACAAAAACAACAACAAGATGACGTTC
AAGCGGAGGAACGGAGGAAGGAACAAGCACGGCCGTGGCCACCGTCAAGT
TCATCCGCTGCTCTAACTGCGGCAAATGCTGCCCTAAGGACAAGGCGATT
AAGAGGTTTTTGGTGAGGAACATTGTTGAGCAAGCTGCTGTTAGGGATGT
TCAGGAGGCGTGTGTTTATGACGGTTACACTCTTCCTAAGTTATATGCTA
AGATGCAGTACTGCGTCTCGTGTGCGATCCACTCTCATGTGGTGAGAGTT
CGTTCCCGTACTAACAGGAGGATCCGTGAGCCCCCGCAACGCTTCAGGCG
CAGGGATGATGTCCCAAAGGCTGGTGGTGCTCTTGGTCAAGGCCCACGAG
CTGGTGGTCCAGCTGGAGCTCCAGCTGCTGCTCGTGCTTGAAAGCTTTCT
GCTGTCAGTGCTTCTGGTCCTTTGAGGCTTTTGAGAT
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