CF509847

Overview
NameCF509847
Unique NameCF509847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length451
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6152 contig Csv1_Contig6152:92..542. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509847 vs. ExPASy Swiss-Prot
Match: VPS29_PONAB (Vacuolar protein sorting-associated protein 29 OS=Pongo abelii GN=VPS29 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.052e-35
Identity = 61/93 (65.59%), Postives = 77/93 (82.80%), Query Frame = 1
Query:  172 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDS 450
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ S
Sbjct:    6 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMAS 98          
BLAST of CF509847 vs. ExPASy Swiss-Prot
Match: VPS29_MOUSE (Vacuolar protein sorting-associated protein 29 OS=Mus musculus GN=Vps29 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.052e-35
Identity = 61/93 (65.59%), Postives = 77/93 (82.80%), Query Frame = 1
Query:  172 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDS 450
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ S
Sbjct:    6 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMAS 98          
BLAST of CF509847 vs. ExPASy Swiss-Prot
Match: VPS29_HUMAN (Vacuolar protein sorting-associated protein 29 OS=Homo sapiens GN=VPS29 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.052e-35
Identity = 61/93 (65.59%), Postives = 77/93 (82.80%), Query Frame = 1
Query:  172 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDS 450
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ S
Sbjct:    6 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMAS 98          
BLAST of CF509847 vs. ExPASy Swiss-Prot
Match: VPS29_CHICK (Vacuolar protein sorting-associated protein 29 OS=Gallus gallus GN=VPS29 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.052e-35
Identity = 61/93 (65.59%), Postives = 77/93 (82.80%), Query Frame = 1
Query:  172 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDS 450
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  K+ +DYLK+L  D+HV RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ S
Sbjct:   10 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKDTYDYLKTLAGDVHVVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMAS 102          
BLAST of CF509847 vs. ExPASy Swiss-Prot
Match: VPS29_BOVIN (Vacuolar protein sorting-associated protein 29 OS=Bos taurus GN=VPS29 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.052e-35
Identity = 61/93 (65.59%), Postives = 77/93 (82.80%), Query Frame = 1
Query:  172 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDS 450
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ S
Sbjct:   10 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMAS 102          
BLAST of CF509847 vs. ExPASy Swiss-Prot
Match: VPS29_RAT (Vacuolar protein sorting-associated protein 29 OS=Rattus norvegicus GN=Vps29 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 9.211e-35
Identity = 61/93 (65.59%), Postives = 76/93 (81.72%), Query Frame = 1
Query:  172 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDS 450
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE   YPE K +T+GQFK+G+ HGHQVIPWGD+ S
Sbjct:    6 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDESLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMAS 98          
BLAST of CF509847 vs. ExPASy Swiss-Prot
Match: VPS29_DANRE (Vacuolar protein sorting-associated protein 29 OS=Danio rerio GN=vps29 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 9.211e-35
Identity = 61/93 (65.59%), Postives = 77/93 (82.80%), Query Frame = 1
Query:  172 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDS 450
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ S
Sbjct:    6 LGDLHIPHRCNTLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMAS 98          
BLAST of CF509847 vs. ExPASy Swiss-Prot
Match: VPS29_XENTR (Vacuolar protein sorting-associated protein 29 OS=Xenopus tropicalis GN=vps29 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.571e-34
Identity = 61/93 (65.59%), Postives = 76/93 (81.72%), Query Frame = 1
Query:  172 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDS 450
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE  DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ S
Sbjct:    6 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESFDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMAS 98          
BLAST of CF509847 vs. ExPASy Swiss-Prot
Match: VPS29_XENLA (Vacuolar protein sorting-associated protein 29 OS=Xenopus laevis GN=vps29 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.571e-34
Identity = 61/93 (65.59%), Postives = 76/93 (81.72%), Query Frame = 1
Query:  172 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDS 450
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE  DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ S
Sbjct:    6 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESFDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMAS 98          
BLAST of CF509847 vs. ExPASy Swiss-Prot
Match: VPS29_DICDI (Vacuolar protein sorting-associated protein 29 OS=Dictyostelium discoideum GN=vps29 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.963e-33
Identity = 56/91 (61.54%), Postives = 75/91 (82.42%), Query Frame = 1
Query:  169 AIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGD 441
            AIGD+H+PHR+  +P +FK +LVP KIQHI+CTGNL  KE+HDY K L  D+H+ RG+ DE++ YP+TK ++IGQFK G+CHGHQ++PWGD
Sbjct:    5 AIGDVHVPHRSYGIPPEFKKLLVPEKIQHILCTGNLVSKEIHDYFKVLTSDVHIVRGDLDENTSYPDTKIVSIGQFKFGLCHGHQIVPWGD 95          
The following BLAST results are available for this feature:
BLAST of CF509847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
VPS29_PONAB7.052e-3565.59Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_MOUSE7.052e-3565.59Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_HUMAN7.052e-3565.59Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_CHICK7.052e-3565.59Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_BOVIN7.052e-3565.59Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_RAT9.211e-3565.59Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_DANRE9.211e-3565.59Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_XENTR1.571e-3465.59Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_XENLA1.571e-3465.59Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_DICDI2.963e-3361.54Vacuolar protein sorting-associated protein 29 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-355 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509847 ID=CF509847; Name=CF509847; organism=Citrus sinensis; type=EST; length=451bp
GCGCTATGATCTACGAACTTAACTAAGAAGCCTTGCATCCTTACTTCAGC
CGGTTGCTAATTACCAATTGCTCTTGTTCCTTAAACTAATCAGACAAGAA
CAGATTATGGTGATGGGTCAATATTAAGAGAGAGGTTGCTTATTTTGTTG
AAGATGGTGTTAGTATTAGCAATCGGAGACCTTCACATTCCTCACCGTGC
ATCTGACCTGCCCCAAAAGTTCAAATCTATGCTCGTTCCTGGAAAAATTC
AGCACATCATTTGTACTGGCAATCTCTCTATCAAAGAAGTCCATGATTAT
TTGAAGAGTCTTTGTCCTGATTTGCATGTCACTCGAGGTGAATATGATGA
AGATTCACGTTATCCCGAAACTAAGACACTCACCATTGGGCAATTCAAGC
TTGGAATCTGCCATGGTCATCAGGTTATTCCATGGGGGGACTTGGATTCG
C
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