CF509848

Overview
NameCF509848
Unique NameCF509848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12615 contig Csv1_Contig12615:409..936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y3800_AZOSE (UPF0061 protein AZOSEA38000 OS=Azoarcus sp. (strain EbN1) GN=AZOSEA38000 PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 7.678e-62
Identity = 117/178 (65.73%), Postives = 132/178 (74.16%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSE----RWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            ACY++V P+  V  P L+AWS  VA  L  D  +   P+F   F+G   + G  PYA CYGGHQFG WAGQLGDGRAITLGE +  + +    RWELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH LG+PTTRALCLV TG+ V RDMFYDG PK EPGA+VCRVA SF+RF
Sbjct:   30 ACYSRVMPTP-VSAPHLIAWSPEVAALLGFDESDVRSPEFAAVFAGNALMPGMEPYAACYGGHQFGNWAGQLGDGRAITLGEAVTTRGDGHTGRWELQLKGAGPTPYSRHADGRAVLRSSIREFLCSEAMHHLGVPTTRALCLVGTGEKVVRDMFYDGRPKAEPGAVVCRVAPSFIRF 206          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1574_AZOSB (UPF0061 protein azo1574 OS=Azoarcus sp. (strain BH72) GN=azo1574 PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 4.213e-60
Identity = 119/174 (68.39%), Postives = 131/174 (75.29%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A Y++V+P+  V  P LVA S  VA  L  D  +   P+F   F G   L G  PYA CYGGHQFG WAGQLGDGRAITLGE+LN +  RWELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH LG+PTTRAL LV TG+ V RDMFYDGNP+ EPGAIVCRVA SF+RF
Sbjct:   30 ASYSRVNPTP-VAAPHLVAHSAEVAALLGWDESDIASPEFAEVFGGNRLLDGMEPYAACYGGHQFGNWAGQLGDGRAITLGEVLNGQGGRWELQLKGAGPTPYSRRADGRAVLRSSIREFLCSEAMHHLGVPTTRALSLVGTGEKVVRDMFYDGNPQAEPGAIVCRVAPSFIRF 202          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1788_METFK (UPF0061 protein Mfla_1788 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=Mfla_1788 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 7.945e-59
Identity = 110/174 (63.22%), Postives = 136/174 (78.16%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            AC+++V P++ V +P+L+A+S  + ++LEL  +E   P +    +G   + G  PYA CYGGHQFG WAGQLGDGRAI+LGE++N + +RWELQLKGAG TPYSR ADG AVLRSS+REFLCSEAMH LGIPTTRAL LV TG  V RDMFYDG+P+ E GAIVCRV+ SF+RF
Sbjct:   28 ACWSRVMPTS-VSSPKLLAYSHEMLEALELSEEEIRSPAWVDALAGNGLMPGMEPYAACYGGHQFGHWAGQLGDGRAISLGEVVNRQGQRWELQLKGAGVTPYSRMADGRAVLRSSVREFLCSEAMHHLGIPTTRALSLVQTGDVVIRDMFYDGHPQAEKGAIVCRVSPSFIRF 200          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y3822_GEMAT (UPF0061 protein GAU_3822 OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=GAU_3822 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 9.713e-57
Identity = 110/174 (63.22%), Postives = 128/174 (73.56%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A ++ V P+  V  PQL+A +  VA  L   P++   P+F   F G   L G  P+A CYGGHQFG WAGQLGDGRAI+LGE++    +RWELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH LG+PTTRAL LVTTG  V RD+ Y+GNP  EPGA+VCRVA SF+RF
Sbjct:   30 AAWSAVQPTP-VTAPQLLAVAPDVAAMLGFSPEQTASPEFAAVFGGNALLEGMRPWAACYGGHQFGQWAGQLGDGRAISLGELVTTAGDRWELQLKGAGPTPYSRTADGRAVLRSSIREFLCSEAMHHLGVPTTRALSLVTTGDPVVRDVLYNGNPAPEPGAVVCRVAPSFVRF 202          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y683_TOLAT (UPF0061 protein Tola_0683 OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=Tola_0683 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 5.329e-55
Identity = 110/175 (62.86%), Postives = 127/175 (72.57%), Query Frame = 3
Query:    3 HACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            HA +      A V  PQL+A S  VA  L +   E ++P +    SG   L G  P+A CYGGHQFG WAGQLGDGRAI+LGE+++    RWELQLKGAG TPYSR  DG AVLRSSIREFLCSEAM  LG+PTTRAL LV TG+ + RDMFYDGNP++EPGAIVCRVA SF+RF
Sbjct:   28 HAAFWSAVTPAPVPQPQLIASSAEVAALLGISLAELQQPAWVAALSGNGLLDGMSPFATCYGGHQFGNWAGQLGDGRAISLGELIH-NDLRWELQLKGAGVTPYSRRGDGKAVLRSSIREFLCSEAMFHLGVPTTRALSLVLTGEQIWRDMFYDGNPQQEPGAIVCRVAPSFIRF 201          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1510_NITMU (UPF0061 protein Nmul_A1510 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=Nmul_A1510 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 9.091e-55
Identity = 112/180 (62.22%), Postives = 134/180 (74.44%), Query Frame = 3
Query:    3 HACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPL-----FFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            +A YT+VSP+  V +P+L+AW++ V + L +      RP  P+       +G   L    PYA  YGGHQFG WAGQLGDGRAITLGE+++   +R+ELQLKGAGKTPYSR ADG AVLRSS+REFLCSEAMH LG+PTTRAL LV TG+ V RDMFYDG+P  EPGAIVCRV+ SFLRF
Sbjct:   46 NAGYTQVSPTP-VRSPRLLAWADEVGEMLGI-----ARPASPVSPAVEVLAGNRILPSMQPYAARYGGHQFGHWAGQLGDGRAITLGELISPNDKRYELQLKGAGKTPYSRTADGRAVLRSSVREFLCSEAMHSLGVPTTRALSLVATGEAVIRDMFYDGHPGAEPGAIVCRVSPSFLRF 219          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y9953_RHOBA (UPF0061 protein RB9953 OS=Rhodopirellula baltica GN=RB9953 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 3.454e-54
Identity = 107/174 (61.49%), Postives = 127/174 (72.99%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A +++V P+  V  P+ VA S+ VA+ + LDPK     +     +G     G  P+A CYGGHQFG WAGQLGDGRAI LGE++    + W LQLKGAG TPYSR ADGLAVLRSS+REFLCSEAMH LG+PTTRAL LV TG+ V RDMFYDG+P+ E GAIVCRVA SF+RF
Sbjct:   31 AGFSRVKPTP-VSAPKWVAGSKEVAELIGLDPKWLGSAELTEVLAGNALADGMDPFAMCYGGHQFGNWAGQLGDGRAINLGEVVTADEKHWTLQLKGAGLTPYSRTADGLAVLRSSVREFLCSEAMHHLGVPTTRALSLVLTGEKVLRDMFYDGHPEHELGAIVCRVAPSFIRF 203          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1894_XANCB (UPF0061 protein xcc-b100_1894 OS=Xanthomonas campestris pv. campestris (strain B100) GN=xcc-b100_1894 PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.512e-54
Identity = 109/174 (62.64%), Postives = 126/174 (72.41%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A ++ V P+  V  P L+A+S  VA  L L  ++   P F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE + +   R+ELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH+LG+PTTRAL LV TG  V RDMFYDG+P+ EPGAIVCRVA SF+RF
Sbjct:   29 AAWSAVRPTP-VAAPTLLAYSADVAQRLGLRAEDLASPQFAEVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGVDGGRYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHYLGVPTTRALSLVGTGDAVVRDMFYDGHPRREPGAIVCRVAPSFIRF 201          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y2284_XANCP (UPF0061 protein XCC2284 OS=Xanthomonas campestris pv. campestris GN=XCC2284 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 5.892e-54
Identity = 109/174 (62.64%), Postives = 126/174 (72.41%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A ++ V P+  V  P L+A+S  VA  L L  ++   P F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE + +   R+ELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH+LG+PTTRAL LV TG  V RDMFYDG+P+ EPGAIVCRVA SF+RF
Sbjct:   29 AAWSAVQPTP-VAAPTLLAYSADVAQRLGLRAEDLASPRFAEVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGVDGGRYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHYLGVPTTRALSLVGTGDAVVRDMFYDGHPRREPGAIVCRVAPSFIRF 201          
BLAST of CF509848 vs. ExPASy Swiss-Prot
Match: Y1831_XANC8 (UPF0061 protein XC_1831 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=XC_1831 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 5.892e-54
Identity = 109/174 (62.64%), Postives = 126/174 (72.41%), Query Frame = 3
Query:    6 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRF 527
            A ++ V P+  V  P L+A+S  VA  L L  ++   P F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE + +   R+ELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH+LG+PTTRAL LV TG  V RDMFYDG+P+ EPGAIVCRVA SF+RF
Sbjct:   29 AAWSAVQPTP-VAAPTLLAYSADVAQRLGLRAEDLASPRFAEVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGVDGGRYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHYLGVPTTRALSLVGTGDAVVRDMFYDGHPRREPGAIVCRVAPSFIRF 201          
The following BLAST results are available for this feature:
BLAST of CF509848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
Y3800_AZOSE7.678e-6265.73UPF0061 protein AZOSEA38000 OS=Azoarcus sp. (strai... [more]
Y1574_AZOSB4.213e-6068.39UPF0061 protein azo1574 OS=Azoarcus sp. (strain BH... [more]
Y1788_METFK7.945e-5963.22UPF0061 protein Mfla_1788 OS=Methylobacillus flage... [more]
Y3822_GEMAT9.713e-5763.22UPF0061 protein GAU_3822 OS=Gemmatimonas aurantiac... [more]
Y683_TOLAT5.329e-5562.86UPF0061 protein Tola_0683 OS=Tolumonas auensis (st... [more]
Y1510_NITMU9.091e-5562.22UPF0061 protein Nmul_A1510 OS=Nitrosospira multifo... [more]
Y9953_RHOBA3.454e-5461.49UPF0061 protein RB9953 OS=Rhodopirellula baltica G... [more]
Y1894_XANCB4.512e-5462.64UPF0061 protein xcc-b100_1894 OS=Xanthomonas campe... [more]
Y2284_XANCP5.892e-5462.64UPF0061 protein XCC2284 OS=Xanthomonas campestris ... [more]
Y1831_XANC85.892e-5462.64UPF0061 protein XC_1831 OS=Xanthomonas campestris ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-356 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509848 ID=CF509848; Name=CF509848; organism=Citrus sinensis; type=EST; length=528bp
TGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCT
CAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCC
TAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTC
CTTTGGCGGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTT
GGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGA
GATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTG
GGAAGACTCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGT
AGCATCAGGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCC
AACAACTCGTGCACTTTGTCTTGTGACAACAGGAAAATTTGTTACTCGAG
ACATGTTTTACGATGGCAATCCAAAGGAAGAACCTGGTGCAATTGTTTGC
AGAGTTGCTCAATCTTTTTTGCGCTTTG
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