CF509902

Overview
NameCF509902
Unique NameCF509902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length448
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2181 contig Csv1_Contig2181:46..492. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509902 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.294e-49
Identity = 97/126 (76.98%), Postives = 104/126 (82.54%), Query Frame = 2
Query:   71 VVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLS 448
            ++LL T S+IQAKKS +NLKEIT+KVYFDVEI GK AGRIVMGLFGK VPKT ENFRALCTGEKGIGK+GK LHYKGS+FHRIIPSFMLQ            ESIYGEKF DENFKLKHTGPG LS
Sbjct:   12 LLLLGTLSAIQAKKSKENLKEITHKVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLS 137          
BLAST of CF509902 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 1.749e-46
Identity = 91/128 (71.09%), Postives = 103/128 (80.47%), Query Frame = 2
Query:   65 GPVVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLS 448
            G + L    +SIQAK   ++LKE+T+KVYFDVEI GK AGR+V+GLFGKAVPKTAENFRALCTGEKG+GKSGKPLHYKGS FHRIIPSFM+Q            ESIYG+KF DENFKLKHTGPG+LS
Sbjct:   10 GTLFLFGAIASIQAK---EDLKEVTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLS 134          
BLAST of CF509902 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.990e-38
Identity = 79/127 (62.20%), Postives = 92/127 (72.44%), Query Frame = 2
Query:   71 VVLLATFSSIQAKKSDQNLK-EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLS 448
            VVL     ++ A  S+     +ITNKV+FD+EI  KPAGRIV GL+GK VPKT ENFRALCTGEKG+G SGKPLHYK S FHRIIP+FM+Q            ESIYG+KF DENFK+KH+ PGLLS
Sbjct:    6 VVLAIVLVTLWAMPSEAGKDPKITNKVFFDIEIDNKPAGRIVFGLYGKTVPKTVENFRALCTGEKGLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKHSKPGLLS 132          
BLAST of CF509902 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 8.698e-38
Identity = 73/102 (71.57%), Postives = 81/102 (79.41%), Query Frame = 2
Query:  143 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLS 448
            +V+FD+ IAGKP GRIVM L+   VPKTAENFRALCTGEKG+GKSGKPLH+KGS FHRIIP FM+Q            ESIYGEKFPDENFK KHTGPG+LS
Sbjct:    5 RVFFDITIAGKPTGRIVMELYNDIVPKTAENFRALCTGEKGVGKSGKPLHFKGSKFHRIIPEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLS 106          
BLAST of CF509902 vs. ExPASy Swiss-Prot
Match: CYP3_CAEEL (Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhabditis elegans GN=cyn-3 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 8.141e-36
Identity = 71/103 (68.93%), Postives = 80/103 (77.67%), Query Frame = 2
Query:  140 NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLS 448
            +KV+FD+ I GK +GRIVM L+   VPKTA NFRALCTGE GIGKSGKPLH+KGS FHRIIP+FM+Q            ESIYGEKFPDENFK KHTGPG+LS
Sbjct:    4 SKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLS 106          
BLAST of CF509902 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 6.892e-35
Identity = 69/102 (67.65%), Postives = 75/102 (73.53%), Query Frame = 2
Query:  143 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLS 448
            KV+FD+ I G PAGR+VM LF    PKTAENFRALCTGEKG+GK GKPLHYKGSTFHR+IP FM Q            ESIYG KF DENF  KHTGPG+LS
Sbjct:    5 KVFFDLTIGGAPAGRVVMELFADTTPKTAENFRALCTGEKGVGKMGKPLHYKGSTFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFNDENFVKKHTGPGILS 106          
BLAST of CF509902 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 6.892e-35
Identity = 68/102 (66.67%), Postives = 78/102 (76.47%), Query Frame = 2
Query:  143 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLS 448
            KV+FD+ IAG PAGRIVM L+    P+TAENFRALCTGEKG+G+SGKPLHYKGSTFHR+IP+FM Q            ESIYG KF DENF  +HTGPG+LS
Sbjct:    5 KVFFDMAIAGNPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQGGDFTAGNGTGAESIYGAKFADENFIKRHTGPGILS 106          
BLAST of CF509902 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 7.620e-34
Identity = 67/102 (65.69%), Postives = 75/102 (73.53%), Query Frame = 2
Query:  143 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLS 448
            +V+FD+ + G PAGRIVM L+   VPKTAENFRALCTGEKG+GKSGKPLHYKGSTFHR+IP FM Q            ESIYGEKFPDE F  K   PG+LS
Sbjct:    5 RVFFDMTVGGAPAGRIVMELYANEVPKTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLS 106          
BLAST of CF509902 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 7.620e-34
Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = 2
Query:  134 ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLS 448
            +  KVYFD+ +  K AGRIVM L+   VP+TAENFRALCTGE+GIGKSGKPLHYKGS FHR+IP FM Q            ESIYG KF DENF  KHTGPG+LS
Sbjct:    2 VNPKVYFDMTVGDKAAGRIVMELYADTVPETAENFRALCTGERGIGKSGKPLHYKGSAFHRVIPKFMCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILS 106          
BLAST of CF509902 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 7.620e-34
Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 2
Query:  143 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLS 448
            KV+FD+ I G PAG+IVM L+    PKTAENFRALCTGEKG+G+SGKPLH+KGS+FHR+IP+FM Q            ESIYG KF DENF+ KHTGPG+LS
Sbjct:    6 KVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILS 107          
The following BLAST results are available for this feature:
BLAST of CF509902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
CP20A_ARATH1.294e-4976.98Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
CP19D_ARATH1.749e-4671.09Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
PPIB_DICDI2.990e-3862.20Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
CYP7_CAEEL8.698e-3871.57Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]
CYP3_CAEEL8.141e-3668.93Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhab... [more]
CYPH_SOLLC6.892e-3567.65Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
CYPH_LUPLU6.892e-3566.67Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CYPH_MAIZE7.620e-3465.69Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
CYPH_BRANA7.620e-3464.76Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
CP19B_ARATH7.620e-3464.71Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-412 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509902 ID=CF509902; Name=CF509902; organism=Citrus sinensis; type=EST; length=448bp
GCGAAACGAGAAACAACGAAGTGATACATGGCTTCGACAAATTTGCTTCC
ACTCACGATGCTATGGGCCTGTTGTCCTGTTGGCCACTTTCTCTTCAATT
CAGGCGAAGAAATCGGATCAGAATTTGAAAGAAATCACAAACAAAGTTTA
CTTTGACGTTGAGATTGCCGGAAAACCTGCCGGACGTATTGTAATGGGTC
TCTTTGGAAAGGCAGTCCCTAAAACTGCAGAAAATTTCCGAGCTTTGTGC
ACAGGGGAGAAAGGGATTGGCAAGAGTGGGAAGCCACTCCACTACAAGGG
AAGTACGTTTCATAGGATTATTCCCAGCTTTATGCTTCAAGGAGGTGATT
TCACTCTTGGTGATGGAAGAGGTGGAGAGTCAATTTATGGAGAGAAGTTC
CCTGACGAAAATTTCAAACTGAAGCACACCGGCCCAGGGCTTTTGTCA
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