CF510008

Overview
NameCF510008
Unique NameCF510008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF510008_ssr68 microsatellite CF510008_ssr68:68..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_PARUW (Chaperone protein dnaJ OS=Protochlamydia amoebophila (strain UWE25) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.844e-23
Identity = 50/79 (63.29%), Postives = 64/79 (81.01%), Query Frame = 3
Query:  318 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGKG 554
            YYE+L+V RGA+ E+IK+AYRK A++YHPDKN G+ +A KRF EI+ AYEVLSD + R +YD YG+E L Q AAGGG+G
Sbjct:    4 YYEILEVARGATPEEIKKAYRKKAVQYHPDKNPGDADAEKRFKEISEAYEVLSDEKKRQVYDRYGKEAL-QGAAGGGQG 81          
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_CAMLR (Chaperone protein dnaJ OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.932e-21
Identity = 45/78 (57.69%), Postives = 62/78 (79.49%), Query Frame = 3
Query:  315 SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 548
            +YYE+L++ + +  E IK+AYRK+ALKYHPD+NQG++EA ++F  +N AYEVLS+ E R+IYD YG+EGLK  A G G
Sbjct:    4 NYYEILEISQTSDKETIKKAYRKMALKYHPDRNQGDKEAEEKFKLVNEAYEVLSNDEKRSIYDRYGKEGLKGQAGGFG 81          
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_SULNB (Chaperone protein dnaJ OS=Sulfurovum sp. (strain NBC37-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.296e-21
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 3
Query:  318 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGKG 554
            YYEVL+V R  S  ++K+AYRKLALKYHPD+N  ++EA ++F  +N AY+VLSD E R IYD YG+EGL+    GGG G
Sbjct:    6 YYEVLEVSRDCSGAELKKAYRKLALKYHPDRNPDDQEAEEKFKIVNEAYQVLSDDEKRTIYDRYGKEGLEGQGMGGGFG 84          
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_HAEIN (Chaperone protein dnaJ OS=Haemophilus influenzae GN=dnaJ PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.304e-21
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 3
Query:  303 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGKG 554
            +A K YYEVL + +GAS+++IKRAY++LA K+HPDKNQG++EA ++F EIN AYEVL D + R  YD YG    +Q    GG G
Sbjct:    1 MAKKDYYEVLGLQKGASEDEIKRAYKRLASKHHPDKNQGSKEAEEKFKEINEAYEVLGDDQKRAAYDQYGHAAFEQGGGAGGFG 84          
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_PASMU (Chaperone protein dnaJ OS=Pasteurella multocida GN=dnaJ PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.342e-21
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 3
Query:  303 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 548
            +A K YY+VL V RGA +++IKRAY+KLA+KYHPD+ QGN+E  ++F EI  AYEVLSD + R  YD YG    +Q   GGG
Sbjct:    1 MAKKDYYDVLGVERGADEKEIKRAYKKLAMKYHPDRTQGNKELEEKFKEIQEAYEVLSDKQKRANYDQYGHAAFEQGGFGGG 82          
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOD6 (Chaperone protein dnaJ OS=Clostridium difficile (strain 630) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.342e-21
Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 3
Query:  312 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGKG 554
            + YYEVL + +GA  ++IK+AYRKLA+KYHPD+N G++EA ++F EIN AYEVLSD   R  YD +G +GL      GG+G
Sbjct:    5 RDYYEVLGISKGAEAQEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEINEAYEVLSDDTKRKTYDQFGHDGLNGQGGFGGQG 85          
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_HAES2 (Chaperone protein dnaJ OS=Haemophilus somnus (strain 2336) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.589e-21
Identity = 43/84 (51.19%), Postives = 62/84 (73.81%), Query Frame = 3
Query:  303 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGKG 554
            +A + YYE+L V +GA D++IKRAY++LA+KYHPD+ +G++E+ ++F EIN AYEVL+D E R +YD YG    +Q    GG G
Sbjct:    1 MAKRDYYEILGVQKGADDKEIKRAYKRLAMKYHPDRTKGDKESEEKFKEINEAYEVLADKEKRAMYDQYGHAAFEQGGGAGGFG 84          
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_HAES1 (Chaperone protein dnaJ OS=Haemophilus somnus (strain 129Pt) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.589e-21
Identity = 43/84 (51.19%), Postives = 62/84 (73.81%), Query Frame = 3
Query:  303 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGKG 554
            +A + YYE+L V +GA D++IKRAY++LA+KYHPD+ +G++E+ ++F EIN AYEVL+D E R +YD YG    +Q    GG G
Sbjct:    1 MAKRDYYEILGVQKGADDKEIKRAYKRLAMKYHPDRTKGDKESEEKFKEINEAYEVLADKEKRAMYDQYGHAAFEQGGGAGGFG 84          
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOB8 (Chaperone protein dnaJ OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.589e-21
Identity = 46/84 (54.76%), Postives = 60/84 (71.43%), Query Frame = 3
Query:  303 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGKG 554
            +A K YYE+L + +GASD++IKRA+RKLA+KYHPD+NQGN EA ++F EIN AY+VLSD E +  YD +G          GG G
Sbjct:    1 MANKDYYELLGLQKGASDDEIKRAFRKLAVKYHPDRNQGNAEAEEKFKEINEAYQVLSDPEKKAKYDQFGSAAFDGSGGFGGGG 84          
BLAST of CF510008 vs. ExPASy Swiss-Prot
Match: DNAJ_ACTPJ (Chaperone protein dnaJ OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.589e-21
Identity = 46/84 (54.76%), Postives = 60/84 (71.43%), Query Frame = 3
Query:  303 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGKG 554
            +A K YYEVL + +GAS+  IKRAY++LA K+HPDKNQG+++A ++F EIN AYEVL D+E R  YD YG    +Q    GG G
Sbjct:    1 MAKKDYYEVLGLQKGASENDIKRAYKRLASKHHPDKNQGSKDAEEKFKEINEAYEVLGDAEKRAAYDQYGHAAFEQGGGAGGFG 84          
The following BLAST results are available for this feature:
BLAST of CF510008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_PARUW7.844e-2363.29Chaperone protein dnaJ OS=Protochlamydia amoebophi... [more]
DNAJ_CAMLR1.932e-2157.69Chaperone protein dnaJ OS=Campylobacter lari (stra... [more]
DNAJ_SULNB3.296e-2158.23Chaperone protein dnaJ OS=Sulfurovum sp. (strain N... [more]
DNAJ_HAEIN4.304e-2154.76Chaperone protein dnaJ OS=Haemophilus influenzae G... [more]
DNAJ_PASMU7.342e-2156.10Chaperone protein dnaJ OS=Pasteurella multocida GN... [more]
DNAJ_CLOD67.342e-2154.32Chaperone protein dnaJ OS=Clostridium difficile (s... [more]
DNAJ_HAES29.589e-2151.19Chaperone protein dnaJ OS=Haemophilus somnus (stra... [more]
DNAJ_HAES19.589e-2151.19Chaperone protein dnaJ OS=Haemophilus somnus (stra... [more]
DNAJ_CLOB89.589e-2154.76Chaperone protein dnaJ OS=Clostridium beijerinckii... [more]
DNAJ_ACTPJ9.589e-2154.76Chaperone protein dnaJ OS=Actinobacillus pleuropne... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-523 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510008 ID=CF510008; Name=CF510008; organism=Citrus sinensis; type=EST; length=556bp
CCTCGCCCAGTTCCTGGGACTTTTAACCGGCAACACCATCACCTGACCTC
ACTGATAATTTCCAAAGGAGAGAGAGAGAGAGAGAGAGACGACTTGCAGC
AACGACTTCTGAATTGACAGATAAAAATTAAAAAGAAAAAAATTATTGTA
ATCTCAGAATTTTGCTAAGATCTGAAAATTAAACCCTAGATTCTAAGTTT
CGGAGAGGCATTAAACTCTCTCCTCTTGTTGATCTATTAATGGCGCATCG
GCGAGCAAGGCTGTTGTTCCTATTGTGCGCACTTTGTTACGCCCTCAACG
TCATTGCGGGGAAGAGCTACTATGAAGTATTGCAAGTGCCGAGGGGAGCA
TCGGACGAGCAGATCAAAAGAGCGTATAGAAAGCTGGCATTGAAGTATCA
TCCTGATAAAAACCAGGGGAATGAAGAAGCTAATAAGCGATTTGCTGAGA
TTAACAATGCGTATGAGGTGTTATCGGATAGCGAAACGAGGAATATATAT
GATACATATGGAGAAGAGGGACTGAAACAGCATGCTGCTGGTGGAGGCAA
AGGTGG
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