CF510009

Overview
NameCF510009
Unique NameCF510009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510009 vs. ExPASy Swiss-Prot
Match: OEP80_ARATH (Outer envelope protein of 80 kDa OS=Arabidopsis thaliana GN=OEP80 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.002e-45
Identity = 106/202 (52.48%), Postives = 126/202 (62.38%), Query Frame = 2
Query:    2 RNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRIIDGGYFCSCMPIA--TRDGIRLIFQLYLK*SFKKKLINFSVKLCLRHYVVFNFFDDYFLWFLVAQGRAKSRVSRDGM*RSKCSSFKVSRACFSQ*LCCAGKIINIRRLDEVITSINGWYMEHGLFGLVSGVEILSGGVIRLQVAEAEVNNISIRFLDRKT 601
            R KDGEELERK L  EAL  LKAC ANSALT+REVQEDV+RII+ GYFCSC P+A  TRDGIRL+FQ+     F+  +   +      + +   F  + F               RDG                       GK+INI+RL+E ITSINGWYME GLFG+VS ++ LSGG++RLQVAEAEVNNISIRFLDRKT
Sbjct:  170 RTKDGEELERKDLEMEALAALKACRANSALTIREVQEDVHRIIESGYFCSCTPVAVDTRDGIRLMFQVEPNQEFRGLVCENA------NVLPSKFIHEAF---------------RDGF----------------------GKVINIKRLEEAITSINGWYMERGLFGIVSDIDTLSGGIVRLQVAEAEVNNISIRFLDRKT 328          
BLAST of CF510009 vs. ExPASy Swiss-Prot
Match: OEP80_ORYSJ (Outer envelope protein of 80 kDa OS=Oryza sativa subsp. japonica GN=OEP80 PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 7.410e-36
Identity = 93/202 (46.04%), Postives = 115/202 (56.93%), Query Frame = 2
Query:    2 RNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRIIDGGYFCSCMPIA--TRDGIRLIFQLYLK*SFKKKLINFSVKLCLRHYVVFNFFDDYFLWFLVAQGRAKSRVSRDGM*RSKCSSFKVSRACFSQ*LCCAGKIINIRRLDEVITSINGWYMEHGLFGLVSGVEILSGGVIRLQVAEAEVNNISIRFLDRKT 601
            R KDGE LER  L   A   L+AC  N+ALTVREVQEDV+R+++ G F SCMP+A  TRDGIRL+F++     F   +   +      + +   F +D F               R G                        KIINIR LD+VI S+NGWY E GL GLVS  EILSGG++RLQV+EAEVNNI+IRFLDR+T
Sbjct:  102 RGKDGEPLERPELEAAAAAALRACRPNAALTVREVQEDVHRVVESGLFRSCMPVAVDTRDGIRLVFEVEPNQDFHGLVCEGA------NMLPSKFLEDAF-------------HDRHG------------------------KIINIRHLDQVIKSVNGWYQERGLTGLVSYAEILSGGILRLQVSEAEVNNINIRFLDRRT 260          
BLAST of CF510009 vs. ExPASy Swiss-Prot
Match: OEP80_ORYSI (Outer envelope protein of 80 kDa OS=Oryza sativa subsp. indica GN=OEP80 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.410e-36
Identity = 93/202 (46.04%), Postives = 115/202 (56.93%), Query Frame = 2
Query:    2 RNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRIIDGGYFCSCMPIA--TRDGIRLIFQLYLK*SFKKKLINFSVKLCLRHYVVFNFFDDYFLWFLVAQGRAKSRVSRDGM*RSKCSSFKVSRACFSQ*LCCAGKIINIRRLDEVITSINGWYMEHGLFGLVSGVEILSGGVIRLQVAEAEVNNISIRFLDRKT 601
            R KDGE LER  L   A   L+AC  N+ALTVREVQEDV+R+++ G F SCMP+A  TRDGIRL+F++     F   +   +      + +   F +D F               R G                        KIINIR LD+VI S+NGWY E GL GLVS  EILSGG++RLQV+EAEVNNI+IRFLDR+T
Sbjct:  102 RGKDGEPLERPELEAAAAAALRACRPNAALTVREVQEDVHRVVESGLFRSCMPVAVDTRDGIRLVFEVEPNQDFHGLVCEGA------NMLPSKFLEDAF-------------HDRHG------------------------KIINIRHLDQVIKSVNGWYQERGLTGLVSYAEILSGGILRLQVSEAEVNNINIRFLDRRT 260          
The following BLAST results are available for this feature:
BLAST of CF510009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
OEP80_ARATH3.002e-4552.48Outer envelope protein of 80 kDa OS=Arabidopsis th... [more]
OEP80_ORYSJ7.410e-3646.04Outer envelope protein of 80 kDa OS=Oryza sativa s... [more]
OEP80_ORYSI7.410e-3646.04Outer envelope protein of 80 kDa OS=Oryza sativa s... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-524 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510009 ID=CF510009; Name=CF510009; organism=Citrus sinensis; type=EST; length=602bp
GAGAAATAAAGACGGTGAAGAACTTGAGAGAAAATACCTCGGAACAGAGG
CGTTAACTGTGTTAAAAGCTTGCCATGCCAACTCAGCATTGACTGTTCGC
GAGGTCCAAGAGGACGTTAACAGGATCATCGATGGCGGTTACTTCTGCTC
GTGTATGCCCATCGCAACGCGTGATGGCATCAGATTGATATTTCAGCTAT
ATTTAAAATAATCTTTTAAGAAAAAATTAATTAACTTTTCTGTAAAATTA
TGCCTTAGACATTATGTTGTATTTAATTTCTTTGATGATTACTTTTTGTG
GTTTCTTGTGGCACAAGGTAGAGCCAAATCAAGAGTTTCACGGGATGGTA
TGTGAAGGAGCAAATGTTCTTCCTTCAAAGTTTCTAGAGCATGCTTTTCG
CAATAGTTATGCTGTGCAGGAAAAATTATCAATATAAGGCGTTTGGATGA
AGTGATAACTTCAATCAATGGCTGGTATATGGAGCATGGTCTATTTGGCT
TGGTTTCTGGTGTTGAAATTCTTTCTGGAGGAGTAATTAGATTACAAGTT
GCAGAAGCTGAGGTCAATAATATTTCCATCCGTTTCCTTGACAGGAAGAC
TG
back to top