CF510012
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF510012 vs. ExPASy Swiss-Prot
Match: SNUT2_PONAB (U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo abelii GN=USP39 PE=2 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 1.566e-50 Identity = 97/170 (57.06%), Postives = 119/170 (70.00%), Query Frame = 2 Query: 11 HHVYINLRTEKVYCLPDGYEINDPSLEDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSP-------LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTL 499 HHV++NL T K YCLPD YEI D SLEDI +VL P FTK+Q+ LDK SRA DG+ YLPG+VGLNNIK D+ N +Q+L V PLRN+FL +NY++ K P LV RFG+L RK+W+ RNFK VSPHE LQAV+ SKK F+I Q + V+F+SW LN L Sbjct: 161 HHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNAL 330
BLAST of CF510012 vs. ExPASy Swiss-Prot
Match: SNUT2_MOUSE (U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39 PE=2 SV=2) HSP 1 Score: 198.364 bits (503), Expect = 1.566e-50 Identity = 97/170 (57.06%), Postives = 119/170 (70.00%), Query Frame = 2 Query: 11 HHVYINLRTEKVYCLPDGYEINDPSLEDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSP-------LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTL 499 HHV++NL T K YCLPD YEI D SLEDI +VL P FTK+Q+ LDK SRA DG+ YLPG+VGLNNIK D+ N +Q+L V PLRN+FL +NY++ K P LV RFG+L RK+W+ RNFK VSPHE LQAV+ SKK F+I Q + V+F+SW LN L Sbjct: 160 HHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNAL 329
BLAST of CF510012 vs. ExPASy Swiss-Prot
Match: SNUT2_HUMAN (U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=1 SV=2) HSP 1 Score: 198.364 bits (503), Expect = 1.566e-50 Identity = 97/170 (57.06%), Postives = 119/170 (70.00%), Query Frame = 2 Query: 11 HHVYINLRTEKVYCLPDGYEINDPSLEDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSP-------LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTL 499 HHV++NL T K YCLPD YEI D SLEDI +VL P FTK+Q+ LDK SRA DG+ YLPG+VGLNNIK D+ N +Q+L V PLRN+FL +NY++ K P LV RFG+L RK+W+ RNFK VSPHE LQAV+ SKK F+I Q + V+F+SW LN L Sbjct: 161 HHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNAL 330
BLAST of CF510012 vs. ExPASy Swiss-Prot
Match: UBP10_SCHPO (Probable mRNA-splicing protein ubp10 OS=Schizosaccharomyces pombe GN=ubp10 PE=2 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 1.858e-35 Identity = 74/163 (45.40%), Postives = 101/163 (61.96%), Query Frame = 2 Query: 11 HHVYINLRTEKVYCLPDGYEINDPSLEDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTL 499 HHV++N T K Y LP+ Y++ +L+DI +V+ P FTK +V +LD S L Y+PG VG+NNIK D+ NV I L V P RN+FL+ +N+ +C LV R L RK+W+ + FK VSP E +Q V S K++ I Q +PVEF+SW LNTL Sbjct: 114 HHVFVNCSTLKFYVLPESYQVESSALQDIAYVMRPTFTKLEVQRLDHTPQLSYDLMLKPYVPGFVGMNNIKNNDYFNVVIHMLAHVKPFRNYFLL-KNFDNCPQ-LVQRLAILIRKLWNHKAFKSHVSPQELIQEVTVLSHKKYSINEQKDPVEFLSWFLNTL 274 The following BLAST results are available for this feature:
BLAST of CF510012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF510012 ID=CF510012; Name=CF510012; organism=Citrus sinensis; type=EST; length=500bpback to top |