CF510018

Overview
NameCF510018
Unique NameCF510018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig700 contig Csv1_Contig700:636..1120. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF510018 vs. ExPASy Swiss-Prot
Match: EP1G_DAUCA (Epidermis-specific secreted glycoprotein EP1 OS=Daucus carota GN=EP1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 7.886e-33
Identity = 75/178 (42.13%), Postives = 106/178 (59.55%), Query Frame = 3 
Query:    3 KSSNAPRPVVYFTFPV-----QFSGLKNVTFNSAPETDEAFAYQLTL----DSSSGGSLILARPKYNATISFLRLGVDGNLRIFTYYDKVDSQPTEETFTLFDR------------DSIWETECQLPERCGKFGLCDDNQCVACPKEKG-LLGWSKECAPTLVNFCRIAAFHYYKVEG 470
            K + +P+P+ Y++F +     +   L+NVTF    E D+ FA+ L+L     +S GG+ IL R KYN T+SFLRL +DGN++I+TY DKVD    E T+TLF +                 +ECQLP++CG FGLC+++QCV CP   G +L WSK C P  ++ C    FHY K+ G
Sbjct:  208 KPTTSPKPIRYYSFSLFTKLNKNESLQNVTFEFENENDQGFAFLLSLKYGTSNSLGGASILNRIKYNTTLSFLRLEIDGNVKIYTYNDKVDYGAWEVTYTLFLKAPPPLFQVSLAATESESSECQLPKKCGNFGLCEESQCVGCPTSSGPVLAWSKTCEPPKLSSCGPKDFHYNKLGG 385
The following BLAST results are available for this feature:
BLAST of CF510018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EP1G_DAUCA7.886e-3342.13Epidermis-specific secreted glycoprotein EP1 OS=Da... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-533 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510018 ID=CF510018; Name=CF510018; organism=Citrus sinensis; type=EST; length=485bp
ACAAAAGCAGCAATGCTCCCCGGCCTGTTGTTTACTTCACTTTCCCTGTT
CAGTTTAGTGGCTTAAAGAATGTAACGTTCAATTCTGCCCCGGAAACTGA
TGAAGCTTTCGCTTATCAACTGACTCTAGATTCTTCATCCGGGGGCAGTC
TTATTTTGGCAAGGCCAAAGTACAACGCCACTATATCGTTTCTTCGGCTA
GGAGTAGATGGGAATCTCAGGATCTTTACTTATTACGACAAGGTTGATTC
GCAGCCAACGGAAGAAACATTCACTCTCTTTGATAGAGATTCAATTTGGG
AAACTGAGTGTCAGCTTCCTGAGAGATGTGGTAAATTTGGACTGTGTGAT
GACAATCAATGTGTTGCTTGTCCTAAAGAGAAGGGCTTGCTTGGCTGGAG
TAAAGAGTGTGCACCGACGCTAGTGAATTTTTGTCGGATAGCGGCTTTCC
ATTATTATAAAGTTGAAGGGGTTGATCATTATATT
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