CF510020

Overview
NameCF510020
Unique NameCF510020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length335
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510020 vs. ExPASy Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.105e-13
Identity = 41/109 (37.61%), Postives = 64/109 (58.72%), Query Frame = 3
Query:    3 LENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIK 326
            ++N +   EA LS K +LH L   W  +R +  +S++V     ++LE L+PHPNL+ L+I ++ G  LP WM    L+N+VS+ + GC NC  L   G+L  L  L ++
Sbjct:  666 VKNDMEAKEANLSAKANLHSLSMSW--DRPNRYESEEV-----KVLEALKPHPNLKYLEIIDFCGFCLPDWMNHSVLKNVVSILISGCENCSCLPPFGELPCLESLELQ 767          
BLAST of CF510020 vs. ExPASy Swiss-Prot
Match: R13L1_ARATH (Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.360e-11
Identity = 37/112 (33.04%), Postives = 59/112 (52.68%), Query Frame = 3
Query:    9 NAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDV--SGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGML 335
            +  +  EA L+ K+ L ++ F W     SS  + +   + +E  + E L+PH ++E+L I  Y G   P W+ D     +V + L+ C  C  L SLGQL  L+ L+I GM+
Sbjct:  713 DVADAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMV 824          
BLAST of CF510020 vs. ExPASy Swiss-Prot
Match: RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.486e-11
Identity = 38/108 (35.19%), Postives = 58/108 (53.70%), Query Frame = 3
Query:    3 LENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNI 323
            ++N  +  EA LS K +LH L   W+N      +S++V     ++LE L+PH NL  L+I+ + G  LP+WM    L+N+VS+ +    NC  L   G L  L  L +
Sbjct:  658 VKNDKDAKEANLSAKGNLHSLSMSWNNFGPHIYESEEV-----KVLEALKPHSNLTSLKIYGFRGIHLPEWMNHSVLKNIVSILISNFRNCSCLPPFGDLPCLESLEL 760          
The following BLAST results are available for this feature:
BLAST of CF510020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RGA3_SOLBU2.105e-1337.61Putative disease resistance protein RGA3 OS=Solanu... [more]
R13L1_ARATH3.360e-1133.04Putative disease resistance RPP13-like protein 1 O... [more]
RGA2_SOLBU7.486e-1135.19Disease resistance protein RGA2 OS=Solanum bulboca... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-535 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510020 ID=CF510020; Name=CF510020; organism=Citrus sinensis; type=EST; length=335bp
AGCTGGAAAATGCTGTAAACGGAGGGGAAGCAAAATTGAGTGAGAAAGAG
AGTCTTCACAAGCTGGTATTTGAATGGAGCAATAACAGAGATAGCAGTCC
TCAATCTCAAGATGTATCAGGTGATGAAGAGAGACTGCTCGAGGACCTGC
AACCTCATCCGAATCTGGAAGAGCTCCAAATCTTTAACTACTTCGGCAAT
AGCTTACCACAATGGATGAGAGATGGGCGGCTTCAGAATCTAGTGAGTTT
GACTTTAAAAGGTTGCACTAATTGCAGAATCCTCTCACTTGGTCAGCTTT
CCAGTCTTCGCGTACTCAACATTAAAGGAATGCTG
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