CF510036

Overview
NameCF510036
Unique NameCF510036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8759 contig Csv1_Contig8759:125..562. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF510036 vs. ExPASy Swiss-Prot
Match: SDG41_ARATH (Protein SET DOMAIN GROUP 41 OS=Arabidopsis thaliana GN=SDG41 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.838e-34
Identity = 38/55 (69.09%), Postives = 49/55 (89.09%), Query Frame = 3 
Query:  273 HGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSASPP 437
            +GP++IVRSIK I  GEE+TV+Y DLLQP G+RQS+LWSKY+F+C+C RC+ASPP
Sbjct:  226 NGPKLIVRSIKRIKSGEEITVSYIDLLQPTGLRQSDLWSKYRFMCNCGRCAASPP 280

HSP 2 Score: 75.0998 bits (183), Expect = 1.838e-34
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:   22 EEAALCLVMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNACYRF 165
            EEAA+C V+TNAVEV D   G  LGIA+Y+  FSWINHSCSPN+CYRF
Sbjct:  142 EEAAICAVLTNAVEVHDSN-GLALGIALYNSSFSWINHSCSPNSCYRF 188
The following BLAST results are available for this feature:
BLAST of CF510036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SDG41_ARATH1.838e-3469.09Protein SET DOMAIN GROUP 41 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-551 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510036 ID=CF510036; Name=CF510036; organism=Citrus sinensis; type=EST; length=438bp
TTGGGCTGCAGGGTCGCTTGGGAGGAGGCTGCGTTGTGTCTGGTGATGAC
CAATGCCGTTGAGGTGCAGGATGATAAGACAGGGCGTATTTTAGGTATCG
CCGTGTACGATAAGGATTTCTCTTGGATCAATCACAGCTGTTCTCCCAAC
GCTTGTTACCGCTTCTCGCTTTCTGAGCCAAATGCTCCGTCGTTTCGCGA
TGAAAAGAAAAAGCGGATTGCTCCTCACGTTGTTTTCGACAGCACTGAGG
CTGAAACTCAAGAAGTAAGAGACATGGTCCAAGGATCATTGTAAGGAGTA
TTAAGCCAATTAACAAAGGCGAGGAGGTAACTGTTGCTTACACTGATTTG
TTGCAACCCAAGGGAATGAGGCAATCAGAGTTGTGGTCAAAGTATCAATT
TGTCTGCCACTGTAGGAGATGCTCTGCATCACCCCCAA
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