CF510077

Overview
NameCF510077
Unique NameCF510077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length458
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9432 contig Csv1_Contig9432:328..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF510077 vs. ExPASy Swiss-Prot
Match: SKI16_ARATH (F-box protein SKIP16 OS=Arabidopsis thaliana GN=SKIP16 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 7.657e-45
Identity = 92/153 (60.13%), Postives = 110/153 (71.90%), Query Frame = 2 
Query:    2 SFKAAYQIWREAFGMYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFCGHLVNVYLIPLSHIIMETKE-IRRHLDFPSRDKYVGVASSSTYSEKFFFLN 457
            SFK AYQ+WRE+F MYPW LVKRV+ CWD LK WL  NFPEAKATLRKG +E D+Q+ E SLKVKLP+PTR+LYRF DGQE  + +    GS+GLIGGYS   H VNVYL+PL  ++ ETKE   R L F SR   + +A+S   S K F L+
Sbjct:   66 SFKRAYQLWRESFRMYPWNLVKRVRLCWDNLKQWLTLNFPEAKATLRKGVTEDDLQEFETSLKVKLPLPTRLLYRFVDGQELSSPNGLD-GSLGLIGGYSAYSHDVNVYLLPLKEVMRETKESFMRDLGFSSRLDLIVMAASVVASLKIFLLD 217
The following BLAST results are available for this feature:
BLAST of CF510077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI16_ARATH7.657e-4560.13F-box protein SKIP16 OS=Arabidopsis thaliana GN=SK... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-592 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510077 ID=CF510077; Name=CF510077; organism=Citrus sinensis; type=EST; length=458bp
TTCTTTCAAGGCAGCTTATCAGATATGGCGGGAAGCTTTTGGCATGTATC
CATGGCCTCTTGTCAAACGAGTTAAAAGATGTTGGGATAGACTTAAAAAC
TGGTTGGCGGAAAATTTCCCAGAGGCTAAGGCTACTCTTCGAAAGGGTGC
ATCAGAAGCAGATATTCAACAGCTGGAAAAAAGTTTGAAAGTTAAGCTGC
CCGTCCCGACAAGGATTCTCTATCGTTTTTGTGATGGTCAAGAATGCCAG
ACTGATGATTTTGAAAGCATAGGTTCAATGGGCCTCATTGGTGGATACTC
TTTTTGTGGGCATCTGGTAAATGTATACTTGATACCTTTGAGTCACATTA
TTATGGAAACAAAGGAGATCAGACGCCACTTGGATTTTCCCAGCAGAGAT
AAATATGTGGGTGTGGCCTCTTCTTCCACATATAGTGAAAAGTTTTTCTT
CCTCAATT
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