CF510116

Overview
NameCF510116
Unique NameCF510116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length320
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig623 contig Csv1_Contig623:57..376. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF510116 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.987e-12
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 2 
Query:  113 YESKRLWKLAGPAIFTSISQYSLGALTQTFAGRVGELELAAFSVENSVIAGLAFGVMLGMGSALETLCG 319
            +ESK LW L+G +I  S+  Y L  +T  F G +G L+LA  S+    I GLA+G+MLGM SA++T+CG
Sbjct:   50 WESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCG 118
The following BLAST results are available for this feature:
BLAST of CF510116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TT12_ARATH2.987e-1247.83Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-631 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510116 ID=CF510116; Name=CF510116; organism=Citrus sinensis; type=EST; length=320bp
GTCAGCGGAAAATACAAGTCCACTTCTGAGTAACAAGGCGACCGAAAGCT
ACGATATTTATAGCGATGGAGATGATCAGCAAAAGCAGTTAGGTTTTGTT
AAGGAATTTGGTTATGAATCTAAGCGGCTATGGAAACTCGCAGGGCCGGC
AATTTTCACCTCTATTAGTCAGTATTCGCTTGGTGCTCTTACTCAAACCT
TTGCTGGTCGCGTCGGTGAACTCGAGCTCGCTGCTTTCTCCGTTGAGAAC
TCTGTCATTGCTGGTCTTGCATTCGGTGTCATGTTGGGAATGGGAAGTGC
TTTGGAGACTTTATGTGGGC
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