CF510128

Overview
NameCF510128
Unique NameCF510128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length293
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510128 vs. ExPASy Swiss-Prot
Match: GUN4C_ARATH (Tetrapyrrole-binding protein, chloroplastic OS=Arabidopsis thaliana GN=GUN4 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.985e-35
Identity = 68/97 (70.10%), Postives = 80/97 (82.47%), Query Frame = 3
Query:    3 EAAEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKDFTKFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPL 293
            EAA KRGYVFFSEV+ I+  DL+AID LW ++SD +FGYSVQ+KIW KV KDFT+FF++V WMK LDTE+ QYNYRAFP EF WE   ETP+GHLPL
Sbjct:  110 EAAVKRGYVFFSEVKTISPEDLQAIDNLWIKHSDGRFGYSVQRKIWLKVKKDFTRFFVKVEWMKLLDTEVVQYNYRAFPDEFKWELNDETPLGHLPL 206          
BLAST of CF510128 vs. ExPASy Swiss-Prot
Match: YCF53_CYACA (Uncharacterized protein ycf53 OS=Cyanidium caldarium GN=ycf53 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.790e-13
Identity = 33/97 (34.02%), Postives = 56/97 (57.73%), Query Frame = 3
Query:    3 EAAEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKDFTKFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPL 293
            E +++R +++F++V  I    +  ++ LW  YS   FG+S+QK+IW  VNK++ KF+ ++GW+           +  +P EF+W      P GHLPL
Sbjct:  131 EQSKQRNWMYFTDVHSINHQSVSDLNHLWELYSQGNFGFSIQKRIWISVNKNWKKFWKKIGWIN------SNSKWLKYPGEFMW--AVNAPPGHLPL 219          
BLAST of CF510128 vs. ExPASy Swiss-Prot
Match: YCF53_PORYE (Uncharacterized protein ycf53 OS=Porphyra yezoensis GN=ycf53 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.759e-13
Identity = 37/95 (38.95%), Postives = 59/95 (62.11%), Query Frame = 3
Query:    9 AEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKDFTKFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPL 293
            A+ R +++F++++ I   DL+ ID+LW  +S  KFG  VQ++IW  V KD+ KF+ ++GW      E+++   R +P EF W +    P GHLPL
Sbjct:  130 AQTRNWLYFTDIKKIPAQDLQTIDKLWHTHSKGKFGLFVQRQIWLSVGKDWGKFWQKIGW------EVDRIPCR-YPEEFQWNS--HGPRGHLPL 215          
BLAST of CF510128 vs. ExPASy Swiss-Prot
Match: YCF53_PORPU (Uncharacterized protein ycf53 OS=Porphyra purpurea GN=ycf53 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.172e-11
Identity = 33/94 (35.11%), Postives = 58/94 (61.70%), Query Frame = 3
Query:   12 EKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKDFTKFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPL 293
            + R +++F++++ I   DL+ ID+LW  +S  KFG+ VQ++IW  + K++ +F+ ++GW      E+ +   R +P EF W +    P GHLPL
Sbjct:  132 KSRNWLYFTDIKKIPVEDLQTIDQLWNAHSKGKFGFFVQRQIWLALEKNWEQFWYKIGW------EINRVPCR-YPEEFHWNS--TGPKGHLPL 216          
The following BLAST results are available for this feature:
BLAST of CF510128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GUN4C_ARATH1.985e-3570.10Tetrapyrrole-binding protein, chloroplastic OS=Ara... [more]
YCF53_CYACA2.790e-1334.02Uncharacterized protein ycf53 OS=Cyanidium caldari... [more]
YCF53_PORYE4.759e-1338.95Uncharacterized protein ycf53 OS=Porphyra yezoensi... [more]
YCF53_PORPU1.172e-1135.11Uncharacterized protein ycf53 OS=Porphyra purpurea... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-643 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510128 ID=CF510128; Name=CF510128; organism=Citrus sinensis; type=EST; length=293bp
GGGAAGCGGCGGAGAAACGCGGGTACGTCTTCTTCTCTGAAGTTCAGTTC
ATTGCAGAGGCCGACTTGAAAGCCATCGACGAGCTCTGGAGACAGTACAG
TGACAACAAGTTTGGGTACAGCGTTCAGAAGAAGATTTGGGAGAAAGTTA
ATAAAGATTTTACAAAATTTTTCATCAGAGTTGGGTGGATGAAGAAGCTG
GATACTGAAATGGAGCAGTACAATTACAGGGCTTTTCCTACTGAGTTTAT
TTGGGAGAACGGGAAGGAAACTCCCGTGGGGCATTTGCCATTA
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