CF510152

Overview
NameCF510152
Unique NameCF510152
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length393
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13838 contig Csv1_Contig13838:183..574. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510152 vs. ExPASy Swiss-Prot
Match: RS11_EUPES (40S ribosomal protein S11 OS=Euphorbia esula GN=RPS11 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.463e-65
Identity = 111/114 (97.37%), Postives = 114/114 (100.00%), Query Frame = 1
Query:    1 GNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP 342
            GNRFWKSIGLGFKTPREAI+GTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHF+KKYQRYEKRHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP
Sbjct:   32 GNRFWKSIGLGFKTPREAIDGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP 145          

HSP 2 Score: 30.4166 bits (67), Expect = 1.463e-65
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 2
Query:  341 PAGSSGGAKKAFTAM 385
            PAGSSGG KKAFTA+
Sbjct:  145 PAGSSGGVKKAFTAI 159          
BLAST of CF510152 vs. ExPASy Swiss-Prot
Match: RS11_SOYBN (40S ribosomal protein S11 OS=Glycine max GN=RPS11 PE=2 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 3.536e-64
Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 1
Query:    1 GNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP 342
            GNRFWKSIGLGFKTPREAIEGTYIDKKCPFTG VSIRGRILAGTCHSAKMNRTIIVRRNYLHF+KKYQRYEKRHSNIPAHISP FRVKEGDHVIIGQCRPLSKTVRFNVLKVIP
Sbjct:   32 GNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP 145          

HSP 2 Score: 29.6462 bits (65), Expect = 3.536e-64
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  341 PAGSSGGAKKAFTAM 385
            PAGSS GAKKAFT M
Sbjct:  145 PAGSSSGAKKAFTGM 159          
BLAST of CF510152 vs. ExPASy Swiss-Prot
Match: RS11_MAIZE (40S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.022e-63
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 1
Query:    1 GNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP 342
            GNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRI+AGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNV+KVIP
Sbjct:   32 GNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVVKVIP 145          

HSP 2 Score: 24.2534 bits (51), Expect = 1.022e-63
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 2
Query:  341 PAGSSGGAKKAFTA 382
            PAGS+   KKAFTA
Sbjct:  145 PAGSAAAGKKAFTA 158          
BLAST of CF510152 vs. ExPASy Swiss-Prot
Match: RS113_ARATH (40S ribosomal protein S11-3 OS=Arabidopsis thaliana GN=RPS11C PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 4.589e-61
Identity = 110/127 (86.61%), Postives = 115/127 (90.55%), Query Frame = 1
Query:    1 GNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPCWVFWWCKEGIHG 381
            GNRFWK+IGLGFKTPREAI+G YID KCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLHFVKKYQRYEKRHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP     + K+   G
Sbjct:   32 GNRFWKNIGLGFKTPREAIDGAYIDSKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTG 158          
BLAST of CF510152 vs. ExPASy Swiss-Prot
Match: RS111_ARATH (40S ribosomal protein S11-1 OS=Arabidopsis thaliana GN=RPS11A PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.022e-60
Identity = 106/114 (92.98%), Postives = 112/114 (98.25%), Query Frame = 1
Query:    1 GNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP 342
            GNRFWK+IGLGFKTPREAI+G Y+DKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRR+YLHFVKKYQRYEKRHSNIPAH+SPCFRVKEGDH+IIGQCRPLSKTVRFNVLKVIP
Sbjct:   32 GNRFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHIIIGQCRPLSKTVRFNVLKVIP 145          
BLAST of CF510152 vs. ExPASy Swiss-Prot
Match: RS112_ARATH (40S ribosomal protein S11-2 OS=Arabidopsis thaliana GN=RPS11B PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 8.469e-60
Identity = 105/114 (92.11%), Postives = 111/114 (97.37%), Query Frame = 1
Query:    1 GNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP 342
            GNRFWK+IGLGFKTPREAIEGTYID+KCPFTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLHFVKKY+RYEKRHSNIPAH+SPCFRVKEGD V IGQCRPLSKTVRFNVLKVIP
Sbjct:   32 GNRFWKNIGLGFKTPREAIEGTYIDQKCPFTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKVIP 145          

HSP 2 Score: 24.2534 bits (51), Expect = 8.469e-60
Identity = 11/15 (73.33%), Postives = 11/15 (73.33%), Query Frame = 2
Query:  341 PAGSSGGAKKAFTAM 385
            PAGSS   KKAFT M
Sbjct:  145 PAGSSSIGKKAFTGM 159          
BLAST of CF510152 vs. ExPASy Swiss-Prot
Match: RS11_DUNTE (40S ribosomal protein S11 OS=Dunaliella tertiolecta GN=RPS11 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.362e-49
Identity = 87/114 (76.32%), Postives = 103/114 (90.35%), Query Frame = 1
Query:    1 GNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP 342
            G+RF+K++GL FKTP+EAI+G Y+DKKCPFTG VSIRGRIL G   S+KM RTIIVRR+YLHF+ KY RYEKRH+NIPAH+SPCFRV++GD VIIGQCRPLSKT+RFNVL+VIP
Sbjct:   31 GHRFFKNVGLNFKTPKEAIDGNYVDKKCPFTGNVSIRGRILTGVVKSSKMMRTIIVRRDYLHFIPKYARYEKRHTNIPAHVSPCFRVRDGDTVIIGQCRPLSKTIRFNVLRVIP 144          
BLAST of CF510152 vs. ExPASy Swiss-Prot
Match: RS11_DICDI (40S ribosomal protein S11 OS=Dictyostelium discoideum GN=rps11 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.446e-46
Identity = 83/111 (74.77%), Postives = 97/111 (87.39%), Query Frame = 1
Query:    1 GNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 333
            G R++K+IGLG++TP++AIEGTYIDKKCPFT  VSIRG IL GT  S KM RT++VRRNYLH++KKY R+EKRHSNIPAH+SP F VKEGD V IGQCRPLSKTVRFNV+K
Sbjct:   31 GIRYYKNIGLGYRTPKDAIEGTYIDKKCPFTSDVSIRGAILRGTVISTKMRRTLVVRRNYLHYIKKYNRFEKRHSNIPAHVSPAFNVKEGDSVTIGQCRPLSKTVRFNVIK 141          
BLAST of CF510152 vs. ExPASy Swiss-Prot
Match: RS11_SCHPO (40S ribosomal protein S11 OS=Schizosaccharomyces pombe GN=rps11a PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 2.988e-44
Identity = 80/113 (70.80%), Postives = 93/113 (82.30%), Query Frame = 1
Query:    1 GNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 339
            G R++K +GLGFKTP EAI G Y+DKKCPF G VSIRGRIL GT  S KM+RTII+RR YLHF+ KY RYEKRH N+ AH+SP FR+ EGD V +GQCRPLSKTVRFNVL+V+
Sbjct:   28 GRRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFRINEGDVVTVGQCRPLSKTVRFNVLRVV 140          
BLAST of CF510152 vs. ExPASy Swiss-Prot
Match: RS11_XENLA (40S ribosomal protein S11 OS=Xenopus laevis GN=rps11 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.304e-43
Identity = 78/111 (70.27%), Postives = 96/111 (86.49%), Query Frame = 1
Query:    7 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 336
            R+++S+GLGFKTPREAI+GTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV
Sbjct:   35 RYYRSVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQVGDTVTVGECRPLSKTVRFNVLKV 145          
The following BLAST results are available for this feature:
BLAST of CF510152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS11_EUPES1.463e-6597.3740S ribosomal protein S11 OS=Euphorbia esula GN=RP... [more]
RS11_SOYBN3.536e-6497.3740S ribosomal protein S11 OS=Glycine max GN=RPS11 ... [more]
RS11_MAIZE1.022e-6398.2540S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=... [more]
RS113_ARATH4.589e-6186.6140S ribosomal protein S11-3 OS=Arabidopsis thalian... [more]
RS111_ARATH1.022e-6092.9840S ribosomal protein S11-1 OS=Arabidopsis thalian... [more]
RS112_ARATH8.469e-6092.1140S ribosomal protein S11-2 OS=Arabidopsis thalian... [more]
RS11_DUNTE2.362e-4976.3240S ribosomal protein S11 OS=Dunaliella tertiolect... [more]
RS11_DICDI5.446e-4674.7740S ribosomal protein S11 OS=Dictyostelium discoid... [more]
RS11_SCHPO2.988e-4470.8040S ribosomal protein S11 OS=Schizosaccharomyces p... [more]
RS11_XENLA3.304e-4370.2740S ribosomal protein S11 OS=Xenopus laevis GN=rps... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-667 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510152 ID=CF510152; Name=CF510152; organism=Citrus sinensis; type=EST; length=393bp
GGGAATCGATTCTGGAAGAGCATAGGCTTGGGATTCAAGACTCCCAGAGA
GGCAATTGAAGGGACTTACATTGATAAGAAGTGTCCGTTCACCGGCACTG
TTTCCATCAGGGGTCGTATCCTTGCTGGTACTTGCCACAGTGCTAAGATG
AACAGAACCATCATCGTTAGGCGTAACTACCTTCACTTTGTGAAGAAATA
TCAGAGGTATGAGAAGAGGCACTCTAACATTCCAGCACACATCTCACCTT
GTTTCCGTGTGAAAGAGGGAGACCATGTTATCATTGGCCAGTGCAGGCCT
TTGTCAAAGACGGTCAGGTTTAATGTCTTGAAAGTGATACCCTGCTGGGT
CTTCTGGTGGTGCAAAGAAGGCATTCACGGCGATGTGAGTTGG
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