CF510175

Overview
NameCF510175
Unique NameCF510175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length293
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2449 contig Csv1_Contig2449:560..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.985e-35
Identity = 71/97 (73.20%), Postives = 75/97 (77.32%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKDVKWPL                   ADKAWGRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VG SAG ++W ARYILERITEIAGV
Sbjct:  134 LLQKDVKWPLGWPVGGYPGPQGPYYCGIGADKAWGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEVWAARYILERITEIAGV 230          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.545e-35
Identity = 72/97 (74.23%), Postives = 75/97 (77.32%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKDV WPL                   ADKA+GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGPAVG SAG +LWVARYILERITEIAGV
Sbjct:  134 LLQKDVNWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGV 230          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.545e-35
Identity = 69/97 (71.13%), Postives = 76/97 (78.35%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQK+VKWP+                   ADKAWGRDIVD+HYKACLYAGINISGINGEVMPGQWE+QVGP+VG SAG +LWV+RYILERITEIAGV
Sbjct:  134 LLQKEVKWPIGWPVGGFPGPQGPYYCGIGADKAWGRDIVDAHYKACLYAGINISGINGEVMPGQWEYQVGPSVGISAGDELWVSRYILERITEIAGV 230          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA1_MEDSA (Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.195e-34
Identity = 69/97 (71.13%), Postives = 75/97 (77.32%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKD+ WPL                   ADKA+GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP+VG SAG ++WVARYILERITE+AGV
Sbjct:  134 LLQKDINWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEVAGV 230          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLN11_ORYSJ (Glutamine synthetase cytosolic isozyme 1-1 OS=Oryza sativa subsp. japonica GN=GLN1-1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.195e-34
Identity = 70/97 (72.16%), Postives = 75/97 (77.32%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKD+ WPL                   ADK++GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP+VG SAG Q+WVARYILERITEIAGV
Sbjct:  134 LLQKDINWPLGWPVGGFPGPQGPYYCGIGADKSFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDQVWVARYILERITEIAGV 230          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.867e-34
Identity = 71/97 (73.20%), Postives = 74/97 (76.29%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQ  VKWP+                   ADKA+GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVG SAG +LWVARYILERITEIAGV
Sbjct:  134 LLQNSVKWPIGWPVGGYPGPQGPYYCGIGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGV 230          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 4.890e-34
Identity = 69/97 (71.13%), Postives = 75/97 (77.32%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKDVKWP+                   ADK++GRD+VDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVG SA  ++WVARYILERITEIAGV
Sbjct:  134 LLQKDVKWPVGWPIGGYPGPQGPYYCGIGADKSFGRDVVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAADEIWVARYILERITEIAGV 230          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA1_MAIZE (Glutamine synthetase root isozyme 1 OS=Zea mays GN=GLN6 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.089e-33
Identity = 67/97 (69.07%), Postives = 75/97 (77.32%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKDV WPL                   ADKA+GRD+VD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VG SAG ++WVARYILERITE+AG+
Sbjct:  134 LLQKDVSWPLGWPVGGYPGPQGPYYCAAGADKAFGRDVVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEMAGI 230          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA1_SOYBN (Glutamine synthetase cytosolic isozyme 1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.423e-33
Identity = 67/97 (69.07%), Postives = 75/97 (77.32%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKD++WPL                   ADKA+GRDIVD+HYKAC+YAGINISGINGEVMPGQWEFQVGP+VG SAG ++W ARYILERITEIAGV
Sbjct:  133 LLQKDIQWPLGWPVGGFPGPQGPYYCGVGADKAFGRDIVDAHYKACIYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEIAGV 229          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA1_PHAVU (Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.423e-33
Identity = 68/97 (70.10%), Postives = 75/97 (77.32%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQK+V WP+                   ADKA+GRDIVD+HYKAC+YAGINISGINGEVMPGQWEFQVGPAVG SAG +LWVARYILERITE+AGV
Sbjct:  134 LLQKEVNWPVGWPVGGFPGPQGPYYCGVGADKAFGRDIVDAHYKACVYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEVAGV 230          
The following BLAST results are available for this feature:
BLAST of CF510175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GLNA1_ALNGL1.985e-3573.20Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA_VIGAC7.545e-3574.23Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA1_VITVI7.545e-3571.13Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA1_MEDSA2.195e-3471.13Glutamine synthetase cytosolic isozyme OS=Medicago... [more]
GLN11_ORYSJ2.195e-3472.16Glutamine synthetase cytosolic isozyme 1-1 OS=Oryz... [more]
GLNA2_VITVI2.867e-3473.20Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLN11_ARATH4.890e-3471.13Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]
GLNA1_MAIZE1.089e-3369.07Glutamine synthetase root isozyme 1 OS=Zea mays GN... [more]
GLNA1_SOYBN1.423e-3369.07Glutamine synthetase cytosolic isozyme 1 OS=Glycin... [more]
GLNA1_PHAVU1.423e-3370.10Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-690 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510175 ID=CF510175; Name=CF510175; organism=Citrus sinensis; type=EST; length=293bp
CCTTACTGCAGAAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGT
TATCCTGGGCCTCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGC
TTGGGGGCGTGACATTGTGGACTCCCATTACAAGGCCTGTCTATATGCAG
GAATCAACATCAGTGGCATCAATGGAGAAGTCATGCCGGGGCAGTGGGAG
TTCCAAGTTGGTCCCGCTGTTGGATTTTCTGCTGGAGCTCAGTTGTGGGT
TGCCCGCTATATTTTAGAGAGGATTACAGAGATTGCTGGAGTT
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