CF510214

Overview
NameCF510214
Unique NameCF510214
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length352
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1683 contig Csv1_Contig1683:19..369. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.749e-34
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERY 350
            MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFS+KGKLFEYSTDSCMERILERY+RY
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRY 73
[Close]
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.395e-34
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 3 
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERY 350
            MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEV LIVFSTKGKLFEY+TDSCMER+LERYERY
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERY 73
[Close]
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.425e-33
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 3 
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERY 350
            MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEV LIVFSTKGKLFEY+ DSCMERILERYERY
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERY 73
[Close]
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.425e-33
Identity = 68/73 (93.15%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERY 350
            MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVAL++FS+KGKLFEYSTDSCME+ILERY+RY
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRY 73
[Close]
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.430e-33
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 3 
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERY 350
            MGRGRVQLKRIENKINRQVTFSKRR+GLLKKAHEISVLCDAEVAL+VFS KGKLFEYSTDSCME+ILERYERY
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERY 73
[Close]
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 2.430e-33
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 3 
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERY 350
            MGRGRVQLKRIENKINRQVTFSKRR+GLLKKAHEISVLCDAEVAL+VFS KGKLFEYSTDSCME+ILERYERY
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERY 73
[Close]
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.430e-33
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 3 
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERY 350
            MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEV LIVFSTKGKLFEY+ DSCMER+LERYERY
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERY 73
[Close]
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 2.687e-32
Identity = 66/73 (90.41%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERY 350
            MGRG+VQLKRIENKINRQVTFSKRRSGLLKKA+EISVLCDAEVALI+FSTKGKL+EY+TDSCM++ILERYERY
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERY 73
[Close]
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.880e-31
Identity = 64/73 (87.67%), Postives = 72/73 (98.63%), Query Frame = 3 
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERY 350
            MGRG+VQLKRIEN INRQVTFSKRRSGLLKKA+EISVLCDAEVALI+FSTKGKL++Y+TDSCM++ILERYERY
Sbjct:    1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERY 73
[Close]
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 8.643e-31
Identity = 64/73 (87.67%), Postives = 71/73 (97.26%), Query Frame = 3 
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERY 350
            MGRGRV+LKRIENKINRQVTFSKRR+GLLKKA EISVLCDAEV+LIVFS KGKLFEYS++SCME++LERYERY
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERY 73
The following BLAST results are available for this feature:
BLAST of CF510214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
AGL8_ARATH3.749e-3497.26Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL8_SOLCO6.395e-3495.89Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SOLLC1.425e-3395.89Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SINAL1.425e-3393.15Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AP1_SINAL2.430e-3394.52Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
AP1_ARATH2.430e-3394.52Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
AGL8_SOLTU2.430e-3394.52Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
MAD14_ORYSJ2.687e-3290.41MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD14_ORYSI3.880e-3187.67MADS-box transcription factor 14 OS=Oryza sativa s... [more]
CAL_ARATH8.643e-3187.67Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-729 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510214 ID=CF510214; Name=CF510214; organism=Citrus sinensis; type=EST; length=352bp
CAGCACACTACTCACTACCTGCTCTAATCTCTGTTCTATAAAAGTACAGA
GATTAGAGAGATACCCAGAAGAAGCCTGCAAGTTTCTTTAGTGGAGAATT
GCCTGGTGATAATTATTAATAGATAGTTAATATGGGGAGAGGAAGGGTGC
AGCTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACTTTCTCTAAG
CGAAGGTCTGGTTTATTGAAAAAAGCCCATGAGATCTCTGTGCTTTGTGA
CGCTGAAGTTGCTTTGATCGTCTTCTCCACTAAAGGCAAACTCTTTGAAT
ACTCTACTGATTCATGCATGGAAAGAATCCTTGAACGATATGAGAGGTAT
TG
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