CF510236

Overview
NameCF510236
Unique NameCF510236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length230
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510236 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.787e-44
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:    3 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLC 230
            FK+KPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKG+CPKGD CEYAHGVFESWLHPAQYRTRLC
Sbjct:  220 FKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGSCPKGDSCEYAHGVFESWLHPAQYRTRLC 295          
BLAST of CF510236 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.371e-43
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 3
Query:    3 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLC 230
            FK+KPCSRAYSHDWTEC FVHPGENARRRDPRKYPYTCVPCPEFRKG+CPKGD CEYAHGVFESWLHPAQY+TRLC
Sbjct:  217 FKVKPCSRAYSHDWTECAFVHPGENARRRDPRKYPYTCVPCPEFRKGSCPKGDSCEYAHGVFESWLHPAQYKTRLC 292          
BLAST of CF510236 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 7.029e-41
Identity = 68/76 (89.47%), Postives = 72/76 (94.74%), Query Frame = 3
Query:    3 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLC 230
            FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKY Y+CVPCPEFRKG+C +GD CEYAHG+FE WLHPAQYRTRLC
Sbjct:  215 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSRGDTCEYAHGIFECWLHPAQYRTRLC 290          
BLAST of CF510236 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.950e-40
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 3
Query:    3 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLC 230
            FKI+PCSRAYSHDWTECPFVHPGENARRRDPRKY Y+CVPCP+FRKG C +GD CEYAHGVFE WLHPAQYRTRLC
Sbjct:  287 FKIRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGVCRRGDMCEYAHGVFECWLHPAQYRTRLC 362          
BLAST of CF510236 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 7.771e-40
Identity = 66/76 (86.84%), Postives = 72/76 (94.74%), Query Frame = 3
Query:    3 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLC 230
            FK++PCSRAYSHDWTECPFVHPGENARRRDPRK+ Y+CVPCP+FRKGAC +GD CEYAHGVFE WLHPAQYRTRLC
Sbjct:  267 FKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLC 342          
BLAST of CF510236 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.015e-39
Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 3
Query:    3 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRK-GACPKGDGCEYAHGVFESWLHPAQYRTRLC 230
            FK+KPCSRAYSHDWTECPFVHPGENARRRDPR+Y Y+CVPCPEFRK G+C KGD CEYAHGVFE WLHPAQYRTRLC
Sbjct:  218 FKVKPCSRAYSHDWTECPFVHPGENARRRDPRRYSYSCVPCPEFRKGGSCRKGDACEYAHGVFECWLHPAQYRTRLC 294          
BLAST of CF510236 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.953e-39
Identity = 65/76 (85.53%), Postives = 71/76 (93.42%), Query Frame = 3
Query:    3 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLC 230
            FKI+PCSRAYSHDWTECPF HPGENARRRDPRK+ YTCVPCP+F+KG+C +GD CEYAHGVFE WLHPAQYRTRLC
Sbjct:  263 FKIRPCSRAYSHDWTECPFAHPGENARRRDPRKFHYTCVPCPDFKKGSCKQGDMCEYAHGVFECWLHPAQYRTRLC 338          
BLAST of CF510236 vs. ExPASy Swiss-Prot
Match: C3H67_ORYSJ (Zinc finger CCCH domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=Os12g0515500 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.466e-38
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 3
Query:    3 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGA-CPKGDGCEYAHGVFESWLHPAQYRTRLC 230
            FK++ CSRAYSHDWTECPFVHPGENARRRDPRKY Y+CVPCPEF+KGA C +GD CEYAHGVFESWLHPAQYRTRLC
Sbjct:  179 FKVRACSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFKKGAGCRRGDMCEYAHGVFESWLHPAQYRTRLC 255          
BLAST of CF510236 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.500e-38
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 3
Query:    3 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRK-GACPKGDGCEYAHGVFESWLHPAQYRTRLC 230
            FK++PCSRAYSHDWTECPFVHPGENARRRDPRK+PYT VPCP FR+ G CP GD CE++HGVFESWLHP+QYRTRLC
Sbjct:  240 FKVRPCSRAYSHDWTECPFVHPGENARRRDPRKHPYTAVPCPNFRRPGGCPSGDSCEFSHGVFESWLHPSQYRTRLC 316          
BLAST of CF510236 vs. ExPASy Swiss-Prot
Match: C3H2_ORYSJ (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.017e-31
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 3
Query:    3 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLC 230
            FK++ C+R  SHDWTECPF HPGE ARRRDPRKY Y+   CP+FRKG C +GD CEYAHGVFE WLHPA+YRT+ C
Sbjct:   82 FKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGGCKRGDACEYAHGVFECWLHPARYRTQPC 157          
The following BLAST results are available for this feature:
BLAST of CF510236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
C3H29_ARATH1.787e-4496.05Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H47_ARATH3.371e-4393.42Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H66_ARATH7.029e-4189.47Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H24_ORYSJ5.950e-4088.16Zinc finger CCCH domain-containing protein 24 OS=O... [more]
C3H30_ARATH7.771e-4086.84Zinc finger CCCH domain-containing protein 30 OS=A... [more]
C3H33_ORYSJ1.015e-3988.31Zinc finger CCCH domain-containing protein 33 OS=O... [more]
C3H56_ARATH2.953e-3985.53Zinc finger CCCH domain-containing protein 56 OS=A... [more]
C3H67_ORYSJ1.466e-3887.01Zinc finger CCCH domain-containing protein 67 OS=O... [more]
C3H50_ORYSJ2.500e-3883.12Zinc finger CCCH domain-containing protein 50 OS=O... [more]
C3H2_ORYSJ1.017e-3171.05Zinc finger CCCH domain-containing protein 2 OS=Or... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-751 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510236 ID=CF510236; Name=CF510236; organism=Citrus sinensis; type=EST; length=230bp
CTTTTAAGATAAAGCCATGCTCGAGGGCTTATTCACATGATTGGACAGAG
TGCCCATTTGTTCATCCGGGTGAGAATGCTAGGAGGAGAGATCCTAGGAA
GTATCCTTACACCTGTGTCCCCTGCCCTGAGTTCCGTAAGGGGGCATGCC
CCAAGGGGGATGGATGTGAGTATGCTCATGGAGTTTTTGAGTCCTGGCTA
CATCCTGCCCAGTACAGAACCAGACTTTGC
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