CF510236
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF510236 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 1.787e-44 Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3 Query: 3 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLC 230 FK+KPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKG+CPKGD CEYAHGVFESWLHPAQYRTRLC Sbjct: 220 FKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGSCPKGDSCEYAHGVFESWLHPAQYRTRLC 295
BLAST of CF510236 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 3.371e-43 Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 3 Query: 3 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLC 230 FK+KPCSRAYSHDWTEC FVHPGENARRRDPRKYPYTCVPCPEFRKG+CPKGD CEYAHGVFESWLHPAQY+TRLC Sbjct: 217 FKVKPCSRAYSHDWTECAFVHPGENARRRDPRKYPYTCVPCPEFRKGSCPKGDSCEYAHGVFESWLHPAQYKTRLC 292
BLAST of CF510236 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 7.029e-41 Identity = 68/76 (89.47%), Postives = 72/76 (94.74%), Query Frame = 3 Query: 3 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLC 230 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKY Y+CVPCPEFRKG+C +GD CEYAHG+FE WLHPAQYRTRLC Sbjct: 215 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSRGDTCEYAHGIFECWLHPAQYRTRLC 290
BLAST of CF510236 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 5.950e-40 Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 3 Query: 3 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLC 230 FKI+PCSRAYSHDWTECPFVHPGENARRRDPRKY Y+CVPCP+FRKG C +GD CEYAHGVFE WLHPAQYRTRLC Sbjct: 287 FKIRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGVCRRGDMCEYAHGVFECWLHPAQYRTRLC 362
BLAST of CF510236 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2) HSP 1 Score: 162.155 bits (409), Expect = 7.771e-40 Identity = 66/76 (86.84%), Postives = 72/76 (94.74%), Query Frame = 3 Query: 3 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLC 230 FK++PCSRAYSHDWTECPFVHPGENARRRDPRK+ Y+CVPCP+FRKGAC +GD CEYAHGVFE WLHPAQYRTRLC Sbjct: 267 FKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLC 342
BLAST of CF510236 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 1.015e-39 Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 3 Query: 3 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRK-GACPKGDGCEYAHGVFESWLHPAQYRTRLC 230 FK+KPCSRAYSHDWTECPFVHPGENARRRDPR+Y Y+CVPCPEFRK G+C KGD CEYAHGVFE WLHPAQYRTRLC Sbjct: 218 FKVKPCSRAYSHDWTECPFVHPGENARRRDPRRYSYSCVPCPEFRKGGSCRKGDACEYAHGVFECWLHPAQYRTRLC 294
BLAST of CF510236 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 2.953e-39 Identity = 65/76 (85.53%), Postives = 71/76 (93.42%), Query Frame = 3 Query: 3 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLC 230 FKI+PCSRAYSHDWTECPF HPGENARRRDPRK+ YTCVPCP+F+KG+C +GD CEYAHGVFE WLHPAQYRTRLC Sbjct: 263 FKIRPCSRAYSHDWTECPFAHPGENARRRDPRKFHYTCVPCPDFKKGSCKQGDMCEYAHGVFECWLHPAQYRTRLC 338
BLAST of CF510236 vs. ExPASy Swiss-Prot
Match: C3H67_ORYSJ (Zinc finger CCCH domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=Os12g0515500 PE=2 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 1.466e-38 Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 3 Query: 3 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGA-CPKGDGCEYAHGVFESWLHPAQYRTRLC 230 FK++ CSRAYSHDWTECPFVHPGENARRRDPRKY Y+CVPCPEF+KGA C +GD CEYAHGVFESWLHPAQYRTRLC Sbjct: 179 FKVRACSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFKKGAGCRRGDMCEYAHGVFESWLHPAQYRTRLC 255
BLAST of CF510236 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 2.500e-38 Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 3 Query: 3 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRK-GACPKGDGCEYAHGVFESWLHPAQYRTRLC 230 FK++PCSRAYSHDWTECPFVHPGENARRRDPRK+PYT VPCP FR+ G CP GD CE++HGVFESWLHP+QYRTRLC Sbjct: 240 FKVRPCSRAYSHDWTECPFVHPGENARRRDPRKHPYTAVPCPNFRRPGGCPSGDSCEFSHGVFESWLHPSQYRTRLC 316
BLAST of CF510236 vs. ExPASy Swiss-Prot
Match: C3H2_ORYSJ (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=Os01g0192000 PE=2 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 1.017e-31 Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 3 Query: 3 FKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLC 230 FK++ C+R SHDWTECPF HPGE ARRRDPRKY Y+ CP+FRKG C +GD CEYAHGVFE WLHPA+YRT+ C Sbjct: 82 FKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGGCKRGDACEYAHGVFECWLHPARYRTQPC 157 The following BLAST results are available for this feature:
BLAST of CF510236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >CF510236 ID=CF510236; Name=CF510236; organism=Citrus sinensis; type=EST; length=230bpback to top |