CF832057

Overview
NameCF832057
Unique NameCF832057
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12693 contig Csv1_Contig12693:147..803. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832057 vs. ExPASy Swiss-Prot
Match: RL321_ARATH (60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 6.916e-57
Identity = 109/133 (81.95%), Postives = 117/133 (87.97%), Query Frame = -3 
Query:  229 MAVPLLTXXXXXXXXXXXXRPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 627
            MAVPLLT            RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG  LMPN+GYGSDKKTRHYLPNGFKKFVVHN +ELELLMMHNRTYCAEIAHNVSTKKRK IVERA+QLDVVVTN+LARLRSQE+E
Sbjct:    1 MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLARLRSQEDE 133
[Close]
BLAST of CF832057 vs. ExPASy Swiss-Prot
Match: RL322_ARATH (60S ribosomal protein L32-2 OS=Arabidopsis thaliana GN=RPL32B PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.483e-56
Identity = 106/133 (79.70%), Postives = 116/133 (87.22%), Query Frame = -3 
Query:  229 MAVPLLTXXXXXXXXXXXXRPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 627
            MAVPLLT            RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG  LMPN+GYGSDKKTRHYLPNGFKKF+VHN +ELELLMMHNRTYCAEIAHN+STKKRK IVERA+QLDVVV+NKL RLRSQE+E
Sbjct:    1 MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQEDE 133
[Close]
BLAST of CF832057 vs. ExPASy Swiss-Prot
Match: RL32_RAT (60S ribosomal protein L32 OS=Rattus norvegicus GN=Rpl32 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 6.284e-42
Identity = 79/112 (70.54%), Postives = 98/112 (87.50%), Query Frame = -3 
Query:  229 QSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 564
            QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   24 QSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CF832057 vs. ExPASy Swiss-Prot
Match: RL32_PIG (60S ribosomal protein L32 OS=Sus scrofa GN=RPL32 PE=2 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 6.284e-42
Identity = 79/112 (70.54%), Postives = 98/112 (87.50%), Query Frame = -3 
Query:  229 QSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 564
            QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   24 QSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CF832057 vs. ExPASy Swiss-Prot
Match: RL32_MOUSE (60S ribosomal protein L32 OS=Mus musculus GN=Rpl32 PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 6.284e-42
Identity = 79/112 (70.54%), Postives = 98/112 (87.50%), Query Frame = -3 
Query:  229 QSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 564
            QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   24 QSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CF832057 vs. ExPASy Swiss-Prot
Match: RL32_MACFA (60S ribosomal protein L32 OS=Macaca fascicularis GN=RPL32 PE=2 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 6.284e-42
Identity = 79/112 (70.54%), Postives = 98/112 (87.50%), Query Frame = -3 
Query:  229 QSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 564
            QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   24 QSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CF832057 vs. ExPASy Swiss-Prot
Match: RL32_HUMAN (60S ribosomal protein L32 OS=Homo sapiens GN=RPL32 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 6.284e-42
Identity = 79/112 (70.54%), Postives = 98/112 (87.50%), Query Frame = -3 
Query:  229 QSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 564
            QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   24 QSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CF832057 vs. ExPASy Swiss-Prot
Match: RL32_SPOFR (60S ribosomal protein L32 OS=Spodoptera frugiperda GN=RpL32 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.207e-42
Identity = 82/112 (73.21%), Postives = 93/112 (83.04%), Query Frame = -3 
Query:  229 QSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 564
            QSDR   +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKTRH LPNGF+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL + VTN  ARLRSQE E
Sbjct:   23 QSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKTIVERAQQLSIRVTNSAARLRSQENE 134
[Close]
BLAST of CF832057 vs. ExPASy Swiss-Prot
Match: RL32_BOVIN (60S ribosomal protein L32 OS=Bos taurus GN=RPL32 PE=2 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 8.207e-42
Identity = 78/112 (69.64%), Postives = 98/112 (87.50%), Query Frame = -3 
Query:  229 QSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 564
            QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + +TN  ARLRS+E E
Sbjct:   24 QSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRITNPNARLRSEENE 135
[Close]
BLAST of CF832057 vs. ExPASy Swiss-Prot
Match: RL32_ICTPU (60S ribosomal protein L32 OS=Ictalurus punctatus GN=rpl32 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.074e-41
Identity = 78/112 (69.64%), Postives = 96/112 (85.71%), Query Frame = -3 
Query:  229 QSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 564
            QSDR + ++ NWR+P+GID+RVR  FKG +LMPNIGYGS+KKT+H LP+GFKKF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   24 QSDRYVKIRRNWRKPRGIDNRVRSGFKGQMLMPNIGYGSNKKTKHMLPSGFKKFLVHNVKELEVLLMSNKSYCAEIAHNVSSKNRKVIVERAAQLAIKVTNPNARLRSEENE 135
The following BLAST results are available for this feature:
BLAST of CF832057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL321_ARATH6.916e-5781.9560S ribosomal protein L32-1 OS=Arabidopsis thalian... [more]
RL322_ARATH4.483e-5679.7060S ribosomal protein L32-2 OS=Arabidopsis thalian... [more]
RL32_RAT6.284e-4270.5460S ribosomal protein L32 OS=Rattus norvegicus GN=... [more]
RL32_PIG6.284e-4270.5460S ribosomal protein L32 OS=Sus scrofa GN=RPL32 P... [more]
RL32_MOUSE6.284e-4270.5460S ribosomal protein L32 OS=Mus musculus GN=Rpl32... [more]
RL32_MACFA6.284e-4270.5460S ribosomal protein L32 OS=Macaca fascicularis G... [more]
RL32_HUMAN6.284e-4270.5460S ribosomal protein L32 OS=Homo sapiens GN=RPL32... [more]
RL32_SPOFR8.207e-4273.2160S ribosomal protein L32 OS=Spodoptera frugiperda... [more]
RL32_BOVIN8.207e-4269.6460S ribosomal protein L32 OS=Bos taurus GN=RPL32 P... [more]
RL32_ICTPU9.074e-4169.6460S ribosomal protein L32 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01D23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832057 ID=CF832057; Name=CF832057; organism=Citrus sinensis; type=EST; length=656bp
TTTTTTTTTTTTTTTTTAATAAAAGGCTTGGCCATAAACCTTCCCTTAAA
AGTTGACATAACATTAATCATGCTCCGCAAAAACCCTCAAATTCAAAATA
TCATTCAGGTGACAAAAATAGAAAATACATCATAATTCAACCCTGGAAAT
GTTCATCCCTTCCAAAGACAACCTAGGAAACATTTGGCCAAAAAGCAAAC
ACTAACACAATATAGAAACCAATTTTTACTCCTCCTCCTGGCTGCGCAAC
CTGGCCAATTTGTTGGTGACCACAACATCCAATTGTGCAGCACGCTCGAC
AATCTCCTTTCTCTTCTTGGTTGATACGTTGTGGGCTATCTCAGCACAAT
AAGTCCTGTTGTGCATCATCAAGAGTTCCAGTTCATTGACATTGTGCACA
ACAAACTTCTTGAATCCATTGGGCAGATAGTGGCGTGTTTTCTTGTCCGA
GCCGTAGCCAATATTGGGCATCAGAACACATCCTTTGAACTTTCTCCTGA
CACGTGAATCAATACCCTTCGGCCTTCGCCAATTTTCCTTCACTGATATC
TTCCTGTCACTCTGGGGCCTCTTGAACTTCTTGAAACGCTTCTTCACTAT
CTTCTTGGTCAGCAAAGGAACAGCCATTTTTCTGAAACGATGAGCCGCGG
CTTCTG
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