CF832096

Overview
NameCF832096
Unique NameCF832096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832096 vs. ExPASy Swiss-Prot
Match: RL291_ARATH (60S ribosomal protein L29-1 OS=Arabidopsis thaliana GN=RPL29A PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.299e-23
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 3
Query:   45 LAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQGGESAAEE 224
            +AKSKNHTAHNQS KAHKNGIKKP++HRHT T+GMDPKFLRNQRYARKHN + GE+A+ E
Sbjct:    1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60          
BLAST of CF832096 vs. ExPASy Swiss-Prot
Match: RL292_ARATH (60S ribosomal protein L29-2 OS=Arabidopsis thaliana GN=RPL29B PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 2.216e-23
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 3
Query:   45 LAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQGGESAAEE 224
            +AKSKNHTAHNQS KAHKNGIKKP++HRHT T+GMDPKFLRNQRYARKHN + GE+A  E
Sbjct:    1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVE 60          
BLAST of CF832096 vs. ExPASy Swiss-Prot
Match: RL29_RAT (60S ribosomal protein L29 OS=Rattus norvegicus GN=Rpl29 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 6.905e-17
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 3
Query:   45 LAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 203
            +AKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CF832096 vs. ExPASy Swiss-Prot
Match: RL29_PIG (60S ribosomal protein L29 OS=Sus scrofa GN=RPL29 PE=2 SV=4)

HSP 1 Score: 86.2705 bits (212), Expect = 6.905e-17
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 3
Query:   45 LAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 203
            +AKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CF832096 vs. ExPASy Swiss-Prot
Match: RL29_MOUSE (60S ribosomal protein L29 OS=Mus musculus GN=Rpl29 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 6.905e-17
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 3
Query:   45 LAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 203
            +AKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CF832096 vs. ExPASy Swiss-Prot
Match: RL29_MACFA (60S ribosomal protein L29 OS=Macaca fascicularis GN=RPL29 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 6.905e-17
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 3
Query:   45 LAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 203
            +AKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CF832096 vs. ExPASy Swiss-Prot
Match: RL29_HUMAN (60S ribosomal protein L29 OS=Homo sapiens GN=RPL29 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 6.905e-17
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 3
Query:   45 LAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 203
            +AKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CF832096 vs. ExPASy Swiss-Prot
Match: RL29_BOVIN (60S ribosomal protein L29 OS=Bos taurus GN=RPL29 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 6.905e-17
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 3
Query:   45 LAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 203
            +AKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CF832096 vs. ExPASy Swiss-Prot
Match: RL29_DROME (60S ribosomal protein L29 OS=Drosophila melanogaster GN=RpL29 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.102e-14
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 3
Query:   45 LAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQGGES 212
            +AKSKNHT HNQ+ KAH+NGIK+P + RH ST GMD KFL NQRYARK N    ES
Sbjct:    1 MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGNLSREES 56          
BLAST of CF832096 vs. ExPASy Swiss-Prot
Match: RL29_YEAST (60S ribosomal protein L29 OS=Saccharomyces cerevisiae GN=RPL29 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 6.049e-13
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 3
Query:   45 LAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYA 182
            +AKSKNHTAHNQ+ KAH+NGIKKPK +++ S KG+DPKF RN ++A
Sbjct:    1 MAKSKNHTAHNQTRKAHRNGIKKPKTYKYPSLKGVDPKFRRNHKHA 46          
The following BLAST results are available for this feature:
BLAST of CF832096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RL291_ARATH1.299e-2380.0060S ribosomal protein L29-1 OS=Arabidopsis thalian... [more]
RL292_ARATH2.216e-2380.0060S ribosomal protein L29-2 OS=Arabidopsis thalian... [more]
RL29_RAT6.905e-1769.8160S ribosomal protein L29 OS=Rattus norvegicus GN=... [more]
RL29_PIG6.905e-1769.8160S ribosomal protein L29 OS=Sus scrofa GN=RPL29 P... [more]
RL29_MOUSE6.905e-1769.8160S ribosomal protein L29 OS=Mus musculus GN=Rpl29... [more]
RL29_MACFA6.905e-1769.8160S ribosomal protein L29 OS=Macaca fascicularis G... [more]
RL29_HUMAN6.905e-1769.8160S ribosomal protein L29 OS=Homo sapiens GN=RPL29... [more]
RL29_BOVIN6.905e-1769.8160S ribosomal protein L29 OS=Bos taurus GN=RPL29 P... [more]
RL29_DROME1.102e-1467.8660S ribosomal protein L29 OS=Drosophila melanogast... [more]
RL29_YEAST6.049e-1367.3960S ribosomal protein L29 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832096 ID=CF832096; Name=CF832096; organism=Citrus sinensis; type=EST; length=463bp
CCGTATAAGCACAGCCGCGAGCAGGGTCTTTTCCTGAAAACGCGTTGGCA
AAGTCAAAGAATCACACAGCGCATAACCAGTCTTACAAGGCTCACAAGAA
CGGTATCAAGAAACCTAAGAAGCACCGCCACACTTCCACCAAAGGGATGG
ACCCAAAGTTCCTTAGGAACCAGAGGTATGCAAGGAAGCATAACAAGCAA
GGAGGTGAATCTGCTGCCGAGGAGTAGATGCTGTTATGGGGTTTTAATTA
CTTAGTTGTTAAGATTTTTTTTACCCCTTGAATGGATATCTGTTTTGTTT
TTGTTATTGTAGTGATTTGATGGCACTCTAGTGGGTTTCATTTCAATTTC
AAGTATCTGCTGAATCGTTAAGCTATGTTTGTTTACTGATGTGATAATTG
CTAAAGATTATTAAACTTTGAATTCTATTTCCTTATTATGAAGCTTTAAA
AAAAAAAAAAAAA
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