CF832276

Overview
NameCF832276
Unique NameCF832276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13417 contig Csv1_Contig13417:516..1173. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832276 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.140e-17
Identity = 54/162 (33.33%), Postives = 79/162 (48.77%), Query Frame = 3
Query:   12 SLYYVNLLAITVGRRVVDIPPGALQFNPTTGAG-TIIDSGTVFTRLVAPAYTAVRDVFRKPVGSNLTVTSLGGFDTCYSVP-----IVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELC 479
            + YY+ L  ++VG   + I P A   N   G G  IIDSGT  T  V  AY +VR  F   +   +   S  GFD C+  P     +  PT  + F G ++ LP +N  I S +  + CLAM ++       +++  N+QQQN  ++YD  NS +  A   C
Sbjct:  278 TFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQINLPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHFDGGDLELPSENYFI-SPSNGLICLAMGSSSQG----MSIFGNIQQQNMLVVYDTGNSVVSFASAQC 434          
BLAST of CF832276 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.839e-15
Identity = 52/159 (32.70%), Postives = 73/159 (45.91%), Query Frame = 3
Query:   18 YYVNLLAITVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRKPVGSNLTVTSLGGFDTCYSVP-----IVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELC 479
            YY+ L  ITVG   + IP    Q       G IIDSGT  T L   AY AV   F   +       S  G  TC+  P     +  P I++ F G  + L + N+LI S A  + CLAM ++       +++  N+QQQ  ++LYD+ N  +      C
Sbjct:  281 YYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQINLPTVDESSSGLSTCFQQPSDGSTVQVPEISMQFDGGVLNLGEQNILI-SPAEGVICLAMGSSS---QLGISIFGNIQQQETQVLYDLQNLAVSFVPTQC 435          
The following BLAST results are available for this feature:
BLAST of CF832276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP1_NEPGR3.140e-1733.33Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
NEP2_NEPGR3.839e-1532.70Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01J16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832276 ID=CF832276; Name=CF832276; organism=Citrus sinensis; type=EST; length=658bp
ACGTAAGATCCTCACTTTACTATGTTAATTTGTTGGCCATTACGGTTGGC
AGAAGAGTTGTTGATATCCCACCTGGTGCCTTACAGTTCAATCCCACAAC
CGGCGCTGGCACTATTATTGATTCTGGCACAGTTTTTACCAGACTGGTGG
CACCAGCTTACACCGCAGTGAGAGACGTGTTCCGTAAACCCGTAGGGAGT
AACTTAACAGTGACATCCCTAGGCGGATTCGACACGTGCTACTCGGTCCC
AATCGTTGCACCGACAATCACGTTGATGTTCTCAGGCATGAACGTGACTC
TACCACAAGACAACCTTCTAATCCACAGCACTGCAGGGAGCATCACATGC
TTGGCCATGGCTGCAGCTCCAGACAACGTCAACTCAGTGCTTAATGTCAT
TGCCAATATGCAGCAACAAAACCACAGAATCCTCTATGATGTGCCCAATT
CAAGGCTCGGTGTCGCCCGTGAGCTTTGCACTTAGATATAGAATTGTGAG
ATAAGTTTGTACTTGTTTTCCCTTTTTCTTGTGGGTCCTGTAATGGGTAA
TTTTAGCCGCGTGAGGTTTGTTTGTCATTATTTCTAATTAACTTTTTATG
GGAGGAATTGTGGGGACTCTAATGAGAACCAAATAAAATTATTTTGTACA
AAAAAAAA
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