CF832286

Overview
NameCF832286
Unique NameCF832286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length355
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832286 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.542e-22
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = -3 
Query:  198 NYIEENDEVLIAGFG*KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 353
            NYIEENDEVLIAGFG KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   91 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
[Close]
BLAST of CF832286 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.542e-22
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = -3 
Query:  198 NYIEENDEVLIAGFG*KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 353
            NYIEENDEVLIAGFG KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   91 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
[Close]
BLAST of CF832286 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.542e-22
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = -3 
Query:  198 NYIEENDEVLIAGFG*KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 353
            NYIEENDEVLIAGFG KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   91 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
[Close]
BLAST of CF832286 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.542e-22
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = -3 
Query:  198 NYIEENDEVLIAGFG*KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 353
            NYIEENDEVLIAGFG KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   91 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
[Close]
BLAST of CF832286 vs. ExPASy Swiss-Prot
Match: RS23_DROME (40S ribosomal protein S23 OS=Drosophila melanogaster GN=RpS23 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.839e-20
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = -3 
Query:  198 NYIEENDEVLIAGFG*KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 353
            NYIEENDEVL+AGFG KGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:   92 NYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
[Close]
BLAST of CF832286 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.839e-20
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = -3 
Query:  198 NYIEENDEVLIAGFG*KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 353
            NYIEENDEVL+AGFG KGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:   92 NYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
[Close]
BLAST of CF832286 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.599e-19
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = -3 
Query:  198 NYIEENDEVLIAGFG*KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 353
            N+IEENDEVL+AGFG KGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:   92 NHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
[Close]
BLAST of CF832286 vs. ExPASy Swiss-Prot
Match: RS23_PAPDA (40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.599e-19
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = -3 
Query:  198 NYIEENDEVLIAGFG*KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 353
            N+IEENDEVL+AGFG KGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:   92 NHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
[Close]
BLAST of CF832286 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.433e-19
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = -3 
Query:  198 NYIEENDEVLIAGFG*KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 353
            N+IEENDEVL+AGFG KGHAVGDIPGVRFKVVKV+ VSLLAL+K+KKE+PRS
Sbjct:   92 NFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALYKQKKERPRS 143
[Close]
BLAST of CF832286 vs. ExPASy Swiss-Prot
Match: RS23_RAT (40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.290e-18
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = -3 
Query:  198 NYIEENDEVLIAGFG*KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 353
            N+IEENDEVL+AGFG KGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   92 NFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
The following BLAST results are available for this feature:
BLAST of CF832286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RS23_FRAAN9.542e-2298.0840S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS23_EUPES9.542e-2298.0840S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS232_ARATH9.542e-2298.0840S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH9.542e-2298.0840S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_DROME6.839e-2088.4640S ribosomal protein S23 OS=Drosophila melanogast... [more]
RS23_DERVA6.839e-2088.4640S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_SPOFR2.599e-1986.5440S ribosomal protein S23 OS=Spodoptera frugiperda... [more]
RS23_PAPDA2.599e-1986.5440S ribosomal protein S23 OS=Papilio dardanus GN=R... [more]
RS23_LUMRU4.433e-1984.6240S ribosomal protein S23 OS=Lumbricus rubellus GN... [more]
RS23_RAT1.290e-1884.6240S ribosomal protein S23 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832286 ID=CF832286; Name=CF832286; organism=Citrus sinensis; type=EST; length=355bp
TTTTTTTTTTTTTTTCACAAACCACTCAAGTAGAAGAGACAGATCCTATT
TTACTAATAGTCTCAACAGAGGGAAAAAAACCAAAAACTTCTCTCAACAG
CAGTACATGATAAAGGAAAACAGTAATCAACGGGGATTAATGAAAATAAA
GTGCTAAAAAAAGAAAACATGGTGAAGTATCTTGAATCAGGAGTTTAGGA
TCTTGGTTTCTCCTTCTTCTCCTTGAAGAGGGCCAAAAGAGACACGCCTG
AAACCTTGACAACCTTAAATCTAACACCAGGAATATCTCCCACAGCATGC
CCCTTTCAACCAAATCCTGCAATAAGTACCTCGTCATTTTCTTCAATGTA
GTTCA
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